BQ623816

Overview
NameBQ623816
Unique NameBQ623816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_RANSY (60S acidic ribosomal protein P0 OS=Rana sylvatica GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.207e-47
Identity = 98/183 (53.55%), Postives = 124/183 (67.76%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N+A   L+P ++GNVG +FTK DL             A AR G +AP DV VP  NTGL P +TSFFQ L I TKI++GT EI++ V+LI+ GDKVG+SEA LL  L I PFS+GL +Q VY+ G
Sbjct:   16 KIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NSALEKLLPHIKGNVGFVFTKEDLAEVRDMLLANKVPASARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVYDNG 196          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_ICTPU (60S acidic ribosomal protein P0 OS=Ictalurus punctatus GN=rplp0 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 7.144e-47
Identity = 98/183 (53.55%), Postives = 122/183 (66.67%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            K+ QLL +Y +  +  ADNVGS Q+Q IR  LRG ++VLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT EI++ V+LIR GDKVG+SEA LL  L I PFSYGL +Q VY+ G
Sbjct:   16 KIIQLLNDYPKCFIVGADNVGSKQMQTIRLSLRGKAIVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLPEVRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIRPGDKVGASEATLLNMLNISPFSYGLIIQQVYDNG 196          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_CHICK (60S acidic ribosomal protein P0 OS=Gallus gallus GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 9.330e-47
Identity = 98/183 (53.55%), Postives = 123/183 (67.21%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            K+ QLL++Y +  V  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP DV VP  NTGL P +TSFFQ L I TKI++GT EI++ V+LI+ GDKVG+SEA LL  L I PFS+GL +Q V++ G
Sbjct:   16 KIIQLLDDYPKCFVVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNG 196          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_CAEEL (60S acidic ribosomal protein P0 OS=Caenorhabditis elegans GN=rpa-0 PE=1 SV=3)

HSP 1 Score: 185.267 bits (469), Expect = 2.079e-46
Identity = 94/183 (51.37%), Postives = 124/183 (67.76%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            KL +L EEY + L+   DNVGS Q+Q IR+ +RG + +LMGKNTM+++ +R H  K  N +   L+P +  NVG +FTK DL            GAPA+ G +AP DV +PP NTG+ P +TSFFQ L IPTKI +GT EI+  V LI++GDKVG+SE+ALL  LG+ PFSYGL V+ VY+ G
Sbjct:   16 KLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTMIRKALRGHLGK--NPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDDG 196          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_HUMAN (60S acidic ribosomal protein P0 OS=Homo sapiens GN=RPLP0 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.546e-46
Identity = 96/183 (52.46%), Postives = 123/183 (67.21%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT EI++ V+LI+ GDKVG+SEA LL  L I PFS+GL +Q V++ G
Sbjct:   16 KIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNG 196          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_BOVIN (60S acidic ribosomal protein P0 OS=Bos taurus GN=RPLP0 PE=2 SV=3)

HSP 1 Score: 184.496 bits (467), Expect = 3.546e-46
Identity = 96/183 (52.46%), Postives = 123/183 (67.21%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT EI++ V+LI+ GDKVG+SEA LL  L I PFS+GL +Q V++ G
Sbjct:   16 KIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNG 196          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_RAT (60S acidic ribosomal protein P0 OS=Rattus norvegicus GN=Rplp0 PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 4.631e-46
Identity = 96/183 (52.46%), Postives = 123/183 (67.21%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT EI++ V+LI+ GDKVG+SEA LL  L I PFS+GL +Q V++ G
Sbjct:   16 KIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNG 196          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_PIG (60S acidic ribosomal protein P0 OS=Sus scrofa GN=RPLP0 PE=2 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 4.631e-46
Identity = 96/183 (52.46%), Postives = 123/183 (67.21%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT EI++ V+LI+ GDKVG+SEA LL  L I PFS+GL +Q V++ G
Sbjct:   16 KIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNG 196          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_MOUSE (60S acidic ribosomal protein P0 OS=Mus musculus GN=Rplp0 PE=1 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 4.631e-46
Identity = 96/183 (52.46%), Postives = 123/183 (67.21%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT EI++ V+LI+ GDKVG+SEA LL  L I PFS+GL +Q V++ G
Sbjct:   16 KIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNG 196          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0L_HUMAN (60S acidic ribosomal protein P0-like OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.760e-45
Identity = 96/183 (52.46%), Postives = 121/183 (66.12%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG  VVLMGKNTMM++ IR H E   N A   L+P + GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT EI++ V+LI+ GDKVG+SEA LL  L I PFS+GL +Q V++ G
Sbjct:   16 KIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKVVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIWGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNG 196          
The following BLAST results are available for this feature:
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RLA0_RANSY3.207e-4753.5560S acidic ribosomal protein P0 OS=Rana sylvatica ... [more]
RLA0_ICTPU7.144e-4753.5560S acidic ribosomal protein P0 OS=Ictalurus punct... [more]
RLA0_CHICK9.330e-4753.5560S acidic ribosomal protein P0 OS=Gallus gallus G... [more]
RLA0_CAEEL2.079e-4651.3760S acidic ribosomal protein P0 OS=Caenorhabditis ... [more]
RLA0_HUMAN3.546e-4652.4660S acidic ribosomal protein P0 OS=Homo sapiens GN... [more]
RLA0_BOVIN3.546e-4652.4660S acidic ribosomal protein P0 OS=Bos taurus GN=R... [more]
RLA0_RAT4.631e-4652.4660S acidic ribosomal protein P0 OS=Rattus norvegic... [more]
RLA0_PIG4.631e-4652.4660S acidic ribosomal protein P0 OS=Sus scrofa GN=R... [more]
RLA0_MOUSE4.631e-4652.4660S acidic ribosomal protein P0 OS=Mus musculus GN... [more]
RLA0L_HUMAN1.760e-4552.4660S acidic ribosomal protein P0-like OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00907 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00907 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623816 ID=BQ623816; Name=BQ623816; organism=Citrus sinensis; type=EST; length=603bp
GTGAAAGCATCGAAGGCCGAGAAGAAGATCGCGTACGACGCCGAAGCTAT
GCCAGTTGCTGGAAGAGTACACCCAAATATTGGTGGCGGCCGCCGACAAC
GTGGGGTCCAATCAACTCCAGAACATTCGTAGGGGTCTGCGTGGAGACTC
CGTTGTGCTCATGGGAAAGAACACTATGATGAAGAGGACTATCAGAATGC
ACGCTGAGAAGACCGGTAACACTGCCTTTCTCAATCTCATCCCCCTCCTT
CAGGGCAATGTTGGGTTGATTTTCACAAAGGGTGATTTGAAGGAAGTGAA
AGAGGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGG
TTGCTCCAATTGATGTGGTTGTTCCTCCCGGCAACACAGGTCTCGACCCC
TCCCAGACCTCCTTCTTCCAGGTGCTTAACATTCCCACCAAGATTAACAA
GGGTACTGGTGAAATTATCACACCTGTGGAGCTTATTAGGAAGGGTGACA
AGGTGGGATCTTCTGAGGCAGCCCTGCTTGCAAAGCTTGGGATTAGACCC
TTCTCTTATGGGCTTGGTGTCCAGTCTGTCTATGAAACGGGTCCGTCTAC
GCC
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