BQ623816

Overview
NameBQ623816
Unique NameBQ623816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_LEIIN (60S acidic ribosomal protein P0 OS=Leishmania infantum GN=LIPO-A PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.774e-29
Identity = 73/190 (38.42%), Postives = 103/190 (54.21%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIP-------LLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            +L   L +Y+ +L    DNV S Q+ ++ R LR  +  +MGK T+  + +   A+    +              LL GN GLIFT   +               ARVG ++P DV+V  G+TG++P+QTSFFQ LNI TKI KG  EI+T  +++  GDKV +S A LL KL I PF Y + V SV++ G
Sbjct:   14 RLVDCLTKYSCVLFVGMDNVRSQQVHDVGRALRAKAEFMMGKKTLQGKIVEKRAQAKDASPEAKHFNDQCEEYNLLSGNTGLIFTNNAVQEITSVLDAHRVKRAARVGAISPCDVIVAAGSTGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVNVLSVWDRG 203          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_ENCCU (60S acidic ribosomal protein P0 OS=Encephalitozoon cuniculi GN=RPP0 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.389e-26
Identity = 69/180 (38.33%), Postives = 103/180 (57.22%), Query Frame = 2
Query:   53 QLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            +L E Y++  +   +NV S QL++I+R   G++ +LMGKN+ ++R I       G      +  L++G+V  +F KG+              A A+VG VA  DV V    TG+ P +TS+FQ L I TKI KG  EII+P +++ +GDKVG S+A LL  L I+PF Y + +  +YE G
Sbjct:   43 KLFETYSRFALVKIENVVSTQLKDIKRQWGGNAELLMGKNSAIRRAIA----DLGKPELSGVYDLVKGDVCFVFFKGNARDIKKAIDENVREACAKVGNVAQRDVWVESCITGMTPDKTSYFQALGIATKITKGKVEIISPYKVLSEGDKVGPSQANLLGMLNIKPFCYKMTMHQIYEDG 218          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_METVO (Acidic ribosomal protein P0 homolog (Fragment) OS=Methanococcus voltae GN=rplP0 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.658e-19
Identity = 62/183 (33.88%), Postives = 90/183 (49.18%), Query Frame = 2
Query:   47 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            L +LL+    I +     V S QLQ IR  +R    + M +NT+MKR I   AE+TGN +F  LI  ++    LI T+ +              AP + G  AP D+ +  G+TG+ P    S  + + +P  I KG   I     + ++GD V +  A +L+KL I+P   GL V  VYE G
Sbjct:   21 LKELLKSGNVIALIDMMEVPSVQLQEIRDTIRDSMTLKMSRNTLMKRAIEEVAEETGNPSFTKLIDCMEKGAALIATEMNPFKLYKTLNESKSPAPIKAGATAPCDIEIKAGSTGMPPGPFLSELKAVGLPAAIEKGKIGIKEDTIVAKEGDVVSAKLAVVLSKLDIKPMEVGLNVLGVYEDG 203          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_METM5 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.404e-18
Identity = 58/183 (31.69%), Postives = 92/183 (50.27%), Query Frame = 2
Query:   47 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            L +LL+  + I +     V + QLQ IR  +R    + M +NT+MKR I   AE+TGN  F  L+  +     +I T+ +              AP + G VAP D+ +  G+TG+ P    S  + + +P  I+KG   I     ++++G+ V    + +L+ LGI+P + GL V  VYE G
Sbjct:   21 LKELLKSSSIIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLMKRAIEEVAEETGNPEFAKLVDYMDKGAAIIATEMNPFKLYKTLDESKSPAPVKGGAVAPCDIEIKAGSTGMPPGPFLSELKAVGLPAAIDKGKIGIKEDTVVVKEGEVVSQKLSVVLSALGIKPVTVGLNVLGVYEDG 203          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_METM6 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.834e-18
Identity = 62/183 (33.88%), Postives = 90/183 (49.18%), Query Frame = 2
Query:   47 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            L +LL+  + I +     V + QLQ IR  +R    + M +NT+MKR I   AE+TGN  F  L   L     +I T+ +              AP + G  AP D+ V  G+TG+ P    S  + + IP  I+KG   I     +I++G+ V    A +L+ LGI+P + GL V  VYE G
Sbjct:   21 LKELLKSTSIIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLMKRAIEEVAEETGNPEFAKLADYLDKGAAIIATEMNPFKLFKTLDESKSPAPVKGGATAPCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVIKEGEVVSQKLAVVLSALGIKPVTVGLNVLGVYEDG 203          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_METM7 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.395e-18
Identity = 61/183 (33.33%), Postives = 90/183 (49.18%), Query Frame = 2
Query:   47 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            L +LL+  + I +     V + QLQ IR  +R    + M +NT+MKR I   AE+TGN  F  L   L     +I T+ +              AP + G  AP D+ V  G+TG+ P    S  + + IP  I+KG   I     ++++G+ V    A +L+ LGI+P + GL V  VYE G
Sbjct:   21 LKELLKSTSIIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLMKRAIEEVAEETGNPEFAKLADYLDKGAAIIATEMNPFKLFKTLDESKSPAPVKGGATAPCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVVKEGEVVSQKLAVVLSALGIKPVTVGLNVLGVYEDG 203          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_HALSA (Acidic ribosomal protein P0 homolog OS=Halobacterium salinarium GN=rplP0 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.395e-18
Identity = 56/184 (30.43%), Postives = 93/184 (50.54%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            +L  LLE Y  + V     + S QLQ++RRGL G + + M +NT++ R +    E+ G+     L   ++G VGL+ T  +              AP   G VAP D+VVP G+TG+DP       Q +    +I +G+ +++    +  +G+ V    + +L++LGI P   GL ++ V+  G
Sbjct:   22 ELVDLLETYDSVGVVNVTGIPSKQLQDMRRGLHGQAALRMSRNTLLVRAL----EEAGD-GLDTLTEYVEGEVGLVATNDNPFGLYQQLENSKTPAPINAGEVAPNDIVVPEGDTGIDPGPFVGELQTIGANARIQEGSIQVLDDSVVTEEGETVSDDVSNVLSELGIEPKEVGLDLRGVFSEG 200          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_HALS3 (Acidic ribosomal protein P0 homolog OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.395e-18
Identity = 56/184 (30.43%), Postives = 93/184 (50.54%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            +L  LLE Y  + V     + S QLQ++RRGL G + + M +NT++ R +    E+ G+     L   ++G VGL+ T  +              AP   G VAP D+VVP G+TG+DP       Q +    +I +G+ +++    +  +G+ V    + +L++LGI P   GL ++ V+  G
Sbjct:   22 ELVDLLETYDSVGVVNVTGIPSKQLQDMRRGLHGQAALRMSRNTLLVRAL----EEAGD-GLDTLTEYVEGEVGLVATNDNPFGLYQQLENSKTPAPINAGEVAPNDIVVPEGDTGIDPGPFVGELQTIGANARIQEGSIQVLDDSVVTEEGETVSDDVSNVLSELGIEPKEVGLDLRGVFSEG 200          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_METVS (Acidic ribosomal protein P0 homolog OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rplP0 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.128e-18
Identity = 58/183 (31.69%), Postives = 90/183 (49.18%), Query Frame = 2
Query:   47 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            L +LL+    I +     V + QLQ IR  +R    + M +NT++KR +   AE+TGN  F  L+  L     ++ T+ +              AP + G +AP D+ V  G+TG+ P    S  + + IP  I+KG   I     + ++GD +    A +L+ LGI+P + GL V  VYE G
Sbjct:   21 LKELLKSANVIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLIKRAVEEVAEETGNPEFAKLVDYLDKGAAIVVTEMNPFKLFKTLEESKSPAPIKGGAIAPCDIEVKSGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVAKEGDVISPKLAVVLSALGIKPVTVGLNVLGVYEEG 203          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_METMP (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis GN=rplP0 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.968e-18
Identity = 59/183 (32.24%), Postives = 90/183 (49.18%), Query Frame = 2
Query:   47 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            L +LL+    I +     V + QLQ IR  +R    + M +NT+MKR I   AE+TGN  F  L+  +     +I T+ +              AP + G +AP D+ V  G+TG+ P    S  + + IP  I+KG   I     ++++G+ V    A +L+ L I+P + GL V  VYE G
Sbjct:   21 LKELLKSSNIIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLMKRAIEEVAEETGNPEFAKLVDYMDKGAAIIATEMNPFKLYKTLDESKSPAPVKGGAIAPCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKIVVKEGEVVSQKLAVVLSALDIKPVTVGLNVLGVYEDG 203          
The following BLAST results are available for this feature:
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RLA0_LEIIN8.774e-2938.4260S acidic ribosomal protein P0 OS=Leishmania infa... [more]
RLA0_ENCCU2.389e-2638.3360S acidic ribosomal protein P0 OS=Encephalitozoon... [more]
RLA0_METVO1.658e-1933.88Acidic ribosomal protein P0 homolog (Fragment) OS=... [more]
RLA0_METM51.404e-1831.69Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METM61.834e-1833.88Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METM72.395e-1833.33Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_HALSA2.395e-1830.43Acidic ribosomal protein P0 homolog OS=Halobacteri... [more]
RLA0_HALS32.395e-1830.43Acidic ribosomal protein P0 homolog OS=Halobacteri... [more]
RLA0_METVS3.128e-1831.69Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METMP6.968e-1832.24Acidic ribosomal protein P0 homolog OS=Methanococc... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00907 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00907 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623816 ID=BQ623816; Name=BQ623816; organism=Citrus sinensis; type=EST; length=603bp
GTGAAAGCATCGAAGGCCGAGAAGAAGATCGCGTACGACGCCGAAGCTAT
GCCAGTTGCTGGAAGAGTACACCCAAATATTGGTGGCGGCCGCCGACAAC
GTGGGGTCCAATCAACTCCAGAACATTCGTAGGGGTCTGCGTGGAGACTC
CGTTGTGCTCATGGGAAAGAACACTATGATGAAGAGGACTATCAGAATGC
ACGCTGAGAAGACCGGTAACACTGCCTTTCTCAATCTCATCCCCCTCCTT
CAGGGCAATGTTGGGTTGATTTTCACAAAGGGTGATTTGAAGGAAGTGAA
AGAGGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGG
TTGCTCCAATTGATGTGGTTGTTCCTCCCGGCAACACAGGTCTCGACCCC
TCCCAGACCTCCTTCTTCCAGGTGCTTAACATTCCCACCAAGATTAACAA
GGGTACTGGTGAAATTATCACACCTGTGGAGCTTATTAGGAAGGGTGACA
AGGTGGGATCTTCTGAGGCAGCCCTGCTTGCAAAGCTTGGGATTAGACCC
TTCTCTTATGGGCTTGGTGTCCAGTCTGTCTATGAAACGGGTCCGTCTAC
GCC
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