BQ623816

Overview
NameBQ623816
Unique NameBQ623816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_THESM (Acidic ribosomal protein P0 homolog OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.552e-17
Identity = 56/184 (30.43%), Postives = 92/184 (50.00%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            +L +LL++Y  I +    +V +  L  +R  LR  +V+ + +NT+++  ++  A++  ++    LI  +QG  G++ TK +              APA+ G  AP DVVVP G T L P       Q L IP +I KG   I     +++ G+ +    A +L +LGI P   GL + + YE G
Sbjct:   14 ELTKLLQDYPVIALVDVADVPAYPLSKMRESLRDKAVLRVSRNTLIELALKKAAQELNDSNLEKLIEHIQGGTGILVTKINPFKLYKFLEESKKPAPAKAGAPAPRDVVVPAGPTPLSPGPLVGEMQALGIPARIEKGKVSIQKDTVVLKAGEIITPQLANILNQLGIEPLEVGLKLLAAYEHG 197          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_THEON (Acidic ribosomal protein P0 homolog OS=Thermococcus onnurineus (strain NA1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.552e-17
Identity = 53/184 (28.80%), Postives = 89/184 (48.37%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            +L  +++ Y  I +    NV +  L  +R  LRG +++ + +NT+++  I+  A++ G      LI  +QG  G++ T+ +              APA+ G+  P DVV+P G T + P       Q L IP +I KG   I     +++ G+ +    A +L  LGI P   GL + + YE G
Sbjct:   14 ELTNIIKSYPVIALVDVANVPAYPLSKMREKLRGKALLRVSRNTLIELAIKRAAQELGKPELEKLIDHIQGGAGILATEMNPFKLYKLLEESKTPAPAKPGVPVPRDVVIPAGPTSISPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDG 197          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_NATPD (Acidic ribosomal protein P0 homolog OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.704e-17
Identity = 54/184 (29.35%), Postives = 91/184 (49.46%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            +L   LE Y  + V     + S QLQ++RR L G + + + +NT+M+R +    +  G      L+  ++G VGLI T  +              AP   G VAP D+V+P G+TG+DP       Q +    +I  G+ +++    ++  G++V S  + +L++LGI P   GL ++ V   G
Sbjct:   21 ELVAFLERYESVGVVDITGIPSRQLQDMRRDLHGTAALRVSRNTLMERALNEGGDGLG-----ELVEHVEGQVGLIGTNDNPFGLYQQLEESKTPAPINAGEVAPNDIVIPEGDTGVDPGPFVGDLQQVGANARIEGGSIKVVEDSTVLSAGEEVSSDLSNVLSELGIEPKEVGLDLRGVSSEG 199          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_PYRKO (Acidic ribosomal protein P0 homolog OS=Pyrococcus kodakaraensis GN=rplP0 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.006e-16
Identity = 53/184 (28.80%), Postives = 87/184 (47.28%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            +L  +++ Y  I +     V +  L  +R  LRG +++ + +NT+++  I+  A++ G      LI  +QG   ++ T+ +              APA+ G V P DVV+P G T L P       Q L IP +I KG   I     +++ G+ +    A +L  LGI P   GL + + YE G
Sbjct:   14 ELANIIKSYPVIALVDVAGVPAYPLSKMRDKLRGKALLRVSRNTLIELAIKRAAQELGQPELEKLIDHIQGGAAILATEMNPFKLYKLLEESKTPAPAKAGAVVPKDVVIPAGPTSLAPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDG 197          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_METTL (Acidic ribosomal protein P0 homolog OS=Methanococcus thermolithotrophicus GN=rplP0 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.716e-16
Identity = 57/184 (30.98%), Postives = 88/184 (47.83%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            KL +LL+    + +     V + QLQ IR  +RG   + M +NT+++R I+  AE+TGN  F  L   +     +I T  +              AP + G VAP D+ V  G+TG+ P       + + IP  I KG   I     + + G+ V    A +L+ LGI+P + GL + + YE G
Sbjct:   20 KLKELLKNGQIVALVDMMEVPARQLQEIRDKIRGTMTLKMSRNTLIERAIKEVAEETGNPEFAKLADYIDKGAAIITTDMNPFKLYKTLEESKSPAPIKGGAVAPCDIEVKAGSTGMPPGPFLGELKSVGIPAAIEKGKIGIKEDKVVAKAGEVVSHKLAVVLSALGIKPVTVGLNLLAAYEDG 203          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_HALVO (Acidic ribosomal protein P0 homolog OS=Halobacterium volcanii GN=rplP0 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.242e-16
Identity = 55/184 (29.89%), Postives = 86/184 (46.74%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            +L   +E Y  + V     + S QLQ++RR L G + V M +NT++ R +        N  F  L   + G V LI T  +              AP   G VAP D+V+P G+TG+DP       Q +    +I  G+  +     ++ +G++V    A +LA+LGI P   GL ++ V+  G
Sbjct:   22 ELVDFIESYESVGVVGVAGIPSRQLQSMRRELHGSAAVRMSRNTLVNRAL-----DEVNDGFEELKEYIAGQVALIGTNDNPFALFKELEASKTPAPINAGEVAPNDIVIPEGDTGVDPGPFVGELQQVGASARIMDGSIMVTEDSNVLSEGEEVSEELANVLAELGIEPKEVGLDLRGVFSEG 200          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_META3 (Acidic ribosomal protein P0 homolog OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.453e-15
Identity = 54/183 (29.51%), Postives = 88/183 (48.09%), Query Frame = 2
Query:   47 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            L +LL+E   I +     V + QLQ IR  +R    + M +NT++KR I   AE++ +  F  L   L+    ++ T  +              AP + G +AP D+VV  G+TG+ P       +   +P  I+KG   I     ++++G+ V    A +L+ LGI+P   GL + + YE G
Sbjct:   20 LKKLLKEGQVIALVDMMEVPAVQLQEIRDNIRDLMTLRMSRNTLIKRAIEELAEESNDPKFAKLAECLERGAAIVITDMNPFKLYKTLEDGKAPAPIKAGAIAPSDIVVEAGSTGMPPGPFLGELKGAGLPAVIDKGKIAIKDDTVIVKEGEVVSPKVAVVLSALGIKPTKVGLDLLAAYEDG 202          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_METTH (Acidic ribosomal protein P0 homolog OS=Methanobacterium thermoautotrophicum GN=rplP0 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.478e-15
Identity = 50/182 (27.47%), Postives = 90/182 (49.45%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYE 586
            +L  L++ Y  + +A   ++ + QLQ +R+ LR  +++ M K T++   +     +  N   L+    ++G   LIFT  +              APA+ G +AP D+VVP G+TG  P       Q + IP KI KG   +     +++ G+++    A +L +L I+P   G+ +++ YE
Sbjct:   14 ELHDLIKGYEVVGIANLADIPARQLQKMRQTLRDSALIRMSKKTLISLALEKAGRELENVDSLS--DYMEGQPALIFTDMNPFKLFKILEDSKTPAPAKPGAIAPDDIVVPKGDTGFAPGPILGELQQIGIPAKIEKGKIVVSNDHVVVKAGEEIPPKVAGILTRLDIQPLEVGIDLRAAYE 193          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_METKA (Acidic ribosomal protein P0 homolog OS=Methanopyrus kandleri GN=rplP0 PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.478e-15
Identity = 55/186 (29.57%), Postives = 91/186 (48.92%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG-DSVVLMGKNTMMKRTIRMHAEKTGNTAFLN-LIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            +L +L++EY  + +   + + + QLQ IR  LR  D+++ M +NT+M+  +    EK      L  L+  ++G V  IFT  D              APA+ G +AP D+VVP G T  +P    S  Q   +P +I  G   I     L+++G+++    A +L KL I P   G+ + ++   G
Sbjct:   27 ELKELMDEYENVGLVDLEGIPAPQLQEIRAKLRERDTIIRMSRNTLMRIALE---EKLDERPELEPLLDYIEGPVAFIFTNLDPFKLYKLLEESKASAPAKPGDIAPEDIVVPEGPTPFEPGPIVSELQQAGLPAQIQDGKVVITKDTVLVKEGEEIDEKTAEILKKLEIEPMEVGVDIVAIVAEG 209          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_METS3 (Acidic ribosomal protein P0 homolog OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.227e-15
Identity = 49/182 (26.92%), Postives = 92/182 (50.55%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYE 586
            +L  L+++Y  I +    N+ + QLQ +R+ L   +V+ M K  ++   +        N   ++L   ++G V +I T+ +              APA+ G +A  D+V+P G+TG +P       Q + IP KI+KG   +     L+  G++V ++ A+ L+++ I P   G+ +++VYE
Sbjct:   14 ELKSLIDKYDVIGIVDLLNIPAKQLQEMRKSLHNKAVIRMSKKNLIDLALEDCNASKNN--IVDLSEHMEGQVAVIATEMNPFKLYKILEDSKTSAPAKPGAIATDDIVIPEGDTGFEPGPFLGELQQVGIPAKIDKGKIVVSKETVLVEAGEEVSAAVASTLSRMDINPMEVGIDLRAVYE 193          
The following BLAST results are available for this feature:
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RLA0_THESM1.552e-1730.43Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]
RLA0_THEON1.552e-1728.80Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]
RLA0_NATPD7.704e-1729.35Acidic ribosomal protein P0 homolog OS=Natronomona... [more]
RLA0_PYRKO1.006e-1628.80Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_METTL1.716e-1630.98Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_HALVO2.242e-1629.89Acidic ribosomal protein P0 homolog OS=Halobacteri... [more]
RLA0_META31.453e-1529.51Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METTH2.478e-1527.47Acidic ribosomal protein P0 homolog OS=Methanobact... [more]
RLA0_METKA2.478e-1529.57Acidic ribosomal protein P0 homolog OS=Methanopyru... [more]
RLA0_METS34.227e-1526.92Acidic ribosomal protein P0 homolog OS=Methanobrev... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00907 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00907 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623816 ID=BQ623816; Name=BQ623816; organism=Citrus sinensis; type=EST; length=603bp
GTGAAAGCATCGAAGGCCGAGAAGAAGATCGCGTACGACGCCGAAGCTAT
GCCAGTTGCTGGAAGAGTACACCCAAATATTGGTGGCGGCCGCCGACAAC
GTGGGGTCCAATCAACTCCAGAACATTCGTAGGGGTCTGCGTGGAGACTC
CGTTGTGCTCATGGGAAAGAACACTATGATGAAGAGGACTATCAGAATGC
ACGCTGAGAAGACCGGTAACACTGCCTTTCTCAATCTCATCCCCCTCCTT
CAGGGCAATGTTGGGTTGATTTTCACAAAGGGTGATTTGAAGGAAGTGAA
AGAGGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGG
TTGCTCCAATTGATGTGGTTGTTCCTCCCGGCAACACAGGTCTCGACCCC
TCCCAGACCTCCTTCTTCCAGGTGCTTAACATTCCCACCAAGATTAACAA
GGGTACTGGTGAAATTATCACACCTGTGGAGCTTATTAGGAAGGGTGACA
AGGTGGGATCTTCTGAGGCAGCCCTGCTTGCAAAGCTTGGGATTAGACCC
TTCTCTTATGGGCTTGGTGTCCAGTCTGTCTATGAAACGGGTCCGTCTAC
GCC
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