BQ623816

Overview
NameBQ623816
Unique NameBQ623816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_PYRHO (Acidic ribosomal protein P0 homolog OS=Pyrococcus horikoshii GN=rplP0 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.211e-15
Identity = 54/185 (29.19%), Postives = 89/185 (48.11%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVL-MGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            +L +L++ Y  I +    ++ +  L  +RR +R +  +L + +NT+++  I+  A++ G      L+  +    G++ T  +              APA+ G V P DVVVP G T L P       Q L IP +I KG   I     +++ G+ +    A +L  LGI+P   GL V +VYE G
Sbjct:   14 ELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVEYIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVVPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDG 198          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_PYRFU (Acidic ribosomal protein P0 homolog OS=Pyrococcus furiosus GN=rplP0 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.606e-14
Identity = 50/185 (27.03%), Postives = 91/185 (49.19%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVL-MGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            +L  L++ Y  + +    ++ +  L  +RR +R ++ +L + +NT+++  I+  A++ G      LI  ++G  G++ T  +              APA+ G   P DVV+P G T L P       Q + IP +I +G   I     +++ G+++    A +L  LGI+P   GL + +VYE G
Sbjct:   14 ELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLINYIEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPGAKVPKDVVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEEITPELANILNALGIQPLEVGLDLLAVYEDG 198          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_METJA (Acidic ribosomal protein P0 homolog OS=Methanocaldococcus jannaschii GN=rplP0 PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.098e-14
Identity = 53/174 (30.46%), Postives = 84/174 (48.28%), Query Frame = 2
Query:   80 LVAAAD--NVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            +VA  D  +V + QLQ IR  +R    + M +NT++ R ++  AE+  N     L   ++    ++ T  +              AP R G +AP D+ V  G+TG+ P       + + IP  I KG   I     +++KG+ V    AA+L +LGI+P   GL + +VYE G
Sbjct:   29 VVAIVDMMDVPAPQLQEIRDKIRDKVKLRMSRNTLIIRALKEAAEELNNPKLAELANYVERGAAILVTDMNPFKLYKLLEENKSPAPVRGGQIAPCDIKVEKGSTGMPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKKGEVVSPKLAAVLDRLGIKPIKVGLNILAVYEDG 202          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_HALMA (50S ribosomal protein L10E OS=Haloarcula marismortui GN=rplP0 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.098e-14
Identity = 49/183 (26.78%), Postives = 92/183 (50.27%), Query Frame = 2
Query:   47 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            + +++E Y  + V     + S QLQ++RR L G + + + +NT+++R +        +    +L   + G VGLI T  +              AP   G VAP D+V+P G+TG+DP       Q +    +I +G+ ++++   ++  G++V    + +L +LGI P   GL +++V+  G
Sbjct:   23 IVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERAL-----DDVDDGLEDLNGYITGQVGLIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNELGIEPKEVGLDLRAVFADG 200          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_THEGJ (Acidic ribosomal protein P0 homolog OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.041e-13
Identity = 48/182 (26.37%), Postives = 85/182 (46.70%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYE 586
            +L ++++ +  I +     V +  L  +R  LRG +++ + +NT+++  I+  A++        L   ++G   ++ T+ +              APA+ G V P DVV+P G T L P       Q L IP +I KG   I     +++ G+ +    A +L  LGI P   GL + + YE
Sbjct:   14 ELTKIIKSHPVIALVDVAGVPAYPLSKMRDKLRGKALLRVSRNTLIELAIKRAAQELNKPDLEKLADYIEGGAAILATEMNPFKLYKLLEESKTPAPAKPGAVVPKDVVIPAGPTSLAPGPLVGEMQALGIPARIEKGKVTIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYE 195          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_PYRAB (Acidic ribosomal protein P0 homolog OS=Pyrococcus abyssi GN=rplP0 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.041e-13
Identity = 51/185 (27.57%), Postives = 87/185 (47.03%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVL-MGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            +L  L++ Y  I +    ++ +  L  +RR +R +  +L + +NT+++  I+  A++ G      L   +    G++ T  +              APA+ G V P DVV+P G T L P       Q + IP +I +G   I     +++ G+ +    A +L  LGI+P   GL V +VYE G
Sbjct:   14 ELANLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAQELGKPELEKLAEYIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVIPAGPTPLAPGPIVGQMQAMGIPARIERGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDG 198          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_METST (Acidic ribosomal protein P0 homolog OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.029e-13
Identity = 45/164 (27.44%), Postives = 82/164 (50.00%), Query Frame = 2
Query:   98 NVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYE 586
            ++ + QLQ +R+ L  ++++ M +    K  I++  E +       L   L+G   ++FTK +              APA+ G +AP D+VVP G+T   P       Q + IP KI+KG+  +    +++ +G+++  + A +L KL I P   G+ + +V E
Sbjct:   32 DIPAKQLQTMRKSLGDNAILKMSR----KNFIKIALENSDKEEVEGLADYLEGQPAMVFTKMNPFKLFKILEDSKTEAPAKAGSIAPADIVVPAGDTSFPPGPILGELQQVGIPAKIDKGSIVVTDDAKIVDEGEEIPKAVADILTKLEIHPMEVGIDLLAVCE 191          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_PICTO (Acidic ribosomal protein P0 homolog OS=Picrophilus torridus GN=rplP0 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.273e-11
Identity = 48/171 (28.07%), Postives = 76/171 (44.44%), Query Frame = 2
Query:   83 VAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPS-QTSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            + +   + +N+ Q IR  +R  + + + +     R +R+  E TG    + L     G V LI T                 APA+ G +A  D+V+ P  T   P  + S FQ   +P  I KG   I + V  ++KGD +   +A +L  L I P + GL + + YE G
Sbjct:   27 IVSIKGLRNNEFQKIRNSIRDKARIKVSR----ARLLRLAIENTGKNNIVKLKDYAHGQVALITTDESPKKIYDILEKSKTKAPAKGGEIAEEDIVIEPKETNFPPGPKISEFQKAGLPAAIEKGKIVIKSEVTFVKKGDVITREKALVLKDLEIYPITAGLDLIAAYEDG 193          
The following BLAST results are available for this feature:
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RLA0_PYRHO7.211e-1529.19Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_PYRFU1.606e-1427.03Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_METJA2.098e-1430.46Acidic ribosomal protein P0 homolog OS=Methanocald... [more]
RLA0_HALMA2.098e-1426.7850S ribosomal protein L10E OS=Haloarcula marismort... [more]
RLA0_THEGJ1.041e-1326.37Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]
RLA0_PYRAB1.041e-1327.57Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_METST3.029e-1327.44Acidic ribosomal protein P0 homolog OS=Methanospha... [more]
RLA0_PICTO1.273e-1128.07Acidic ribosomal protein P0 homolog OS=Picrophilus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00907 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00907 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623816 ID=BQ623816; Name=BQ623816; organism=Citrus sinensis; type=EST; length=603bp
GTGAAAGCATCGAAGGCCGAGAAGAAGATCGCGTACGACGCCGAAGCTAT
GCCAGTTGCTGGAAGAGTACACCCAAATATTGGTGGCGGCCGCCGACAAC
GTGGGGTCCAATCAACTCCAGAACATTCGTAGGGGTCTGCGTGGAGACTC
CGTTGTGCTCATGGGAAAGAACACTATGATGAAGAGGACTATCAGAATGC
ACGCTGAGAAGACCGGTAACACTGCCTTTCTCAATCTCATCCCCCTCCTT
CAGGGCAATGTTGGGTTGATTTTCACAAAGGGTGATTTGAAGGAAGTGAA
AGAGGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGG
TTGCTCCAATTGATGTGGTTGTTCCTCCCGGCAACACAGGTCTCGACCCC
TCCCAGACCTCCTTCTTCCAGGTGCTTAACATTCCCACCAAGATTAACAA
GGGTACTGGTGAAATTATCACACCTGTGGAGCTTATTAGGAAGGGTGACA
AGGTGGGATCTTCTGAGGCAGCCCTGCTTGCAAAGCTTGGGATTAGACCC
TTCTCTTATGGGCTTGGTGTCCAGTCTGTCTATGAAACGGGTCCGTCTAC
GCC
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