BQ623826

Overview
NameBQ623826
Unique NameBQ623826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GL118_ARATH (Germin-like protein subfamily 1 member 18 OS=Arabidopsis thaliana GN=GLP2A PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.848e-17
Identity = 49/125 (39.20%), Postives = 72/125 (57.60%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKAILG 365
            L R+D A  G  P HTHP  SEIL++V G +  GF+SS+   N ++ K L  GD+ +FP G++HFQVN G   A+ F   +S N G+      +F +N  +  +L+ +   LD + VK L+A  G
Sbjct:   96 LVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDASVVKELQAKFG 220          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GLP1_MESCR (Germin-like protein OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.858e-17
Identity = 44/106 (41.51%), Postives = 64/106 (60.38%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSS----ANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLV 308
            +ARLD A  G+ P HTHP A+E+ +V+ G    GF++S+     N ++ K L KGD+ +FPQGL+HFQ+N G    +G    +S NPG+     A+F     SQL+
Sbjct:   97 VARLDFAPHGLNPPHTHPRATEVFVVLEGTFYVGFVTSNLADGGNKLFAKVLNKGDVFVFPQGLIHFQLNIGNYPGVGISGLSSQNPGVITIANAVFGPEHLSQLM 202          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GL13_ORYSJ (Germin-like protein 1-3 OS=Oryza sativa subsp. japonica GN=GER8 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.858e-17
Identity = 47/120 (39.17%), Postives = 73/120 (60.83%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALF--ANNLSSQLVEQTTFLDDATVKRLKA 356
            +AR+D A  G+ P HTHP A+EI+ VV G +  GF+++ AN ++ +T+ KG++ +FP+GL+HFQ N+G   A    + NS  PG Q    ALF  A  L S  + +   +D   V+ +K+
Sbjct:   98 MARIDYAPWGLNPPHTHPRATEIIFVVEGSLDVGFVTT-ANKLFTRTVCKGEVFVFPRGLVHFQKNNGNTPAFAIAALNSQLPGTQSIAAALFGAAPPLPSDTLARAFQVDGGMVEFIKS 216          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: NEC1_NICLS (Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana sanderae GN=NECI PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.345e-17
Identity = 47/120 (39.17%), Postives = 74/120 (61.67%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKA 356
            LAR+D A GG+ P HTHP ASE++ V+ G +  GFI++ AN +  K + KG++ +FP+GL+HFQ N+G   A    +FNS  PG Q     LF  +  +   ++ QT  ++   V+++K+
Sbjct:  103 LARIDYAPGGINPPHTHPRASEMVFVMEGELDVGFITT-ANVLVSKKIIKGEVFVFPRGLVHFQKNNGEVPAAVISAFNSQLPGTQSIPITLFGASPPVPDDVLAQTFQINTEDVQQIKS 221          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GL21_ORYSJ (Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica GN=Os02g0491600 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.345e-17
Identity = 44/121 (36.36%), Postives = 72/121 (59.50%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSA-NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKA 356
            LAR+D A  G+ P H HP A+EIL ++ G +  GF++S+  N ++ K L KGD+ +FPQGL+HFQ N G    +   + +S NPG+     A+F +   +S  ++ +   ++   V R++A
Sbjct:   94 LARVDYAPYGLNPPHIHPRATEILTILEGSLYVGFVTSNPENKLFTKVLNKGDVFVFPQGLIHFQFNYGTKDVIALAALSSQNPGVITIANAVFGSKPFISDDILAKAFQVEKKIVDRIQA 214          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: NEC1_NICPL (Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.287e-17
Identity = 47/120 (39.17%), Postives = 74/120 (61.67%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALF--ANNLSSQLVEQTTFLDDATVKRLKA 356
            LAR+D A GG+ P HTHP ASE++ V+ G +  GFI++ AN +  K + KG++ +FP+GL+HFQ N+G   A    +FNS  PG Q     LF  +  +   ++ QT  ++   V+++K+
Sbjct:  103 LARIDYAPGGINPPHTHPRASEMVFVMEGELDVGFITT-ANVLVSKQITKGEVFVFPRGLVHFQKNNGKIPAAVVSAFNSQLPGTQSIPITLFGASPTVPDDVLAQTFQINIEDVQQIKS 221          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GL22_ARATH (Germin-like protein subfamily 2 member 2 OS=Arabidopsis thaliana GN=At1g02335 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.287e-17
Identity = 43/94 (45.74%), Postives = 62/94 (65.96%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFA 284
            LAR+D A GG+ P HTHP A+E++ V+ G +  GFI++ AN ++ KT+K G++ +FP+GL+HFQ N+G   A    +FNS  PG       LFA
Sbjct:   95 LARIDYAPGGLNPPHTHPRATEVVYVLEGELEVGFITT-ANKLFTKTIKIGEVFVFPRGLVHFQKNNGKSPASVLSAFNSQLPGTASVAATLFA 187          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GL123_ORYSJ (Putative germin-like protein 12-3 OS=Oryza sativa subsp. japonica GN=Os12g0154900 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.082e-16
Identity = 49/125 (39.20%), Postives = 73/125 (58.40%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSA----NTVYVKTLKKGDIMIFPQGLLHFQVNSGAD-GALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKA 356
            +AR+D A  G  P HTHP A+EIL V+ G +  GF++S+     N ++ KTL KGD+ +FP+GL+HFQ N   D  A   V+ +S NPG      A+F +N  +S  ++ +   +D   V  L+A
Sbjct:   97 MARIDYAPKGQNPPHTHPRATEILSVIEGSLYVGFVTSNQANGENKLFTKTLNKGDVFVFPEGLIHFQFNPSYDKPAAAIVALSSQNPGAITIANAVFGSNPPISDDVLAKAFQVDKKAVDWLQA 221          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GL122_ORYSJ (Germin-like protein 12-2 OS=Oryza sativa subsp. japonica GN=Os12g0154800 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.082e-16
Identity = 49/125 (39.20%), Postives = 73/125 (58.40%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSA----NTVYVKTLKKGDIMIFPQGLLHFQVNSGAD-GALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKA 356
            +AR+D A  G  P HTHP A+EIL V+ G +  GF++S+     N ++ KTL KGD+ +FPQGL+HFQ N   D  A+   + +S NPG      A+F +N  +S  ++ +   +D   V  L+A
Sbjct:   97 MARIDYAPKGQNPPHTHPRATEILTVLEGTLYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSNSPISDDVLAKAFQVDKKAVDWLQA 221          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GL116_ARATH (Germin-like protein subfamily 1 member 16 OS=Arabidopsis thaliana GN=At5g39130 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.082e-16
Identity = 48/125 (38.40%), Postives = 71/125 (56.80%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKAILG 365
            L R+D A  G  P HTHP  SEIL++V G +  GF+SS+   N ++ K L  GD+ +FP G++HFQ+N G   A+ F   +S N G+      +F +N  +  +L+ +   LD   VK L+A  G
Sbjct:   96 LVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQLNIGKIPAIAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDANVVKELQAKFG 220          
The following BLAST results are available for this feature:
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
GL118_ARATH2.848e-1739.20Germin-like protein subfamily 1 member 18 OS=Arabi... [more]
GLP1_MESCR4.858e-1741.51Germin-like protein OS=Mesembryanthemum crystallin... [more]
GL13_ORYSJ4.858e-1739.17Germin-like protein 1-3 OS=Oryza sativa subsp. jap... [more]
NEC1_NICLS6.345e-1739.17Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana s... [more]
GL21_ORYSJ6.345e-1736.36Putative germin-like protein 2-1 OS=Oryza sativa s... [more]
NEC1_NICPL8.287e-1739.17Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE... [more]
GL22_ARATH8.287e-1745.74Germin-like protein subfamily 2 member 2 OS=Arabid... [more]
GL123_ORYSJ1.082e-1639.20Putative germin-like protein 12-3 OS=Oryza sativa ... [more]
GL122_ORYSJ1.082e-1639.20Germin-like protein 12-2 OS=Oryza sativa subsp. ja... [more]
GL116_ARATH1.082e-1638.40Germin-like protein subfamily 1 member 16 OS=Arabi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_01005 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01005 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623826 ID=BQ623826; Name=BQ623826; organism=Citrus sinensis; type=EST; length=551bp
GCTTGGCACGCCTAGATCTTGCAAAGGGTGGCGTAATCCCAATCCACACT
CATCCAGCTGCTTCCGAAATCCTTCTTGTTGTGCATGGCTGCATAACTGC
CGGGTTCATTTCCTCTTCAGCTAACACTGTTTACGTAAAGACGCTTAAGA
AGGGAGATATCATGATCTTTCCACAAGGGTTGTTGCATTTTCAAGTAAAT
TCCGGTGCGGACGGAGCCCTCGGTTTTGTTAGCTTCAACAGCCCGAATCC
TGGACTCCAAATCACCGATTTCGCCTTATTTGCTAACAACTTGTCTTCCC
AATTGGTGGAGCAGACCACTTTCCTTGACGATGCTACGGTGAAGAGGCTC
AAGGCTATCCTTGGTGGCACCGGCTAGGCTTATTAGTTACCACATTCTTC
ATTTGTAGTTTTGAGTTCTTAATTTCATTTAGTTGCTAATGTTTTTGATT
GTTGGAATTCACGAGTTAGTATTTTCTGTTCTCACTTCCCCTATCTTTTC
TTCTGAATAAATAAAATTTCTCTCATTTAAAAAAAAAAAAAAAAAAACTC
C
back to top