BQ623826

Overview
NameBQ623826
Unique NameBQ623826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GL24_ORYSJ (Germin-like protein 2-4 OS=Oryza sativa subsp. japonica GN=Os02g0532500 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.414e-16
Identity = 46/121 (38.02%), Postives = 73/121 (60.33%), Query Frame = 3
Query:    6 ARLDL-AKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKAILG 365
            AR DL A GGV P H HP A+E  LV+ G + AGF+ S    ++ K L++G++M+FP+ ++HFQ+N G   A  + +FNS NPG+      +F + +   ++E+   L  A ++RL+   G
Sbjct:  101 ARADLSAAGGVNPPHYHPRATETALVLAGRVYAGFVDSGGR-LFAKVLEQGEVMVFPRAMVHFQLNVGDTPATVYGAFNSENPGIVRIPATVFGSGIREAVLERAFGLTPAELRRLEKRFG 220          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GL19_ARATH (Putative germin-like protein subfamily 1 member 9 OS=Arabidopsis thaliana GN=At5g38910 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.846e-16
Identity = 43/97 (44.33%), Postives = 60/97 (61.86%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSA-NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN 290
            L R+D    G  P HTHP ASE+L V  G +  GF++S+  N ++ KTL +GD+ +FPQGL+HFQVN G   A+ F   +S NPG+      +F +N
Sbjct:   97 LVRIDYGVYGQNPPHTHPRASEVLYVAVGTLFVGFVTSNPENRLFSKTLYEGDVFVFPQGLIHFQVNVGKYPAVAFAGLSSQNPGVITIADTVFGSN 193          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GL12_ORYSJ (Germin-like protein 1-2 OS=Oryza sativa subsp. japonica GN=Os01g0705100 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.846e-16
Identity = 45/124 (36.29%), Postives = 76/124 (61.29%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKAILGG 368
            + R DLA GG+ P H+HP ASE++LV+ G +  GF +++AN ++ K +++ ++ + P+GL HFQ+N GA  A     F+S +PGL    FALFA    +  +++ +T  + +  V  +K+   G
Sbjct:  101 ITRTDLAPGGLNPPHSHPRASELVLVLSGEVMVGF-TTAANRLFSKVVREKELFVVPRGLQHFQLNVGAGNASFVAMFDSQSPGLVTPTFALFATQPAMPMEVLAKTFLMGEDEVGAIKSKFAG 223          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GL121_ORYSJ (Germin-like protein 12-1 OS=Oryza sativa subsp. japonica GN=Os12g0154700 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.846e-16
Identity = 49/125 (39.20%), Postives = 72/125 (57.60%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSA----NTVYVKTLKKGDIMIFPQGLLHFQVNSGAD-GALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKA 356
            +AR+D A  G  P HTHP A+EIL V  G +  GF++S+     N ++ KTL KGD+ +FPQGL+HFQ N   D  A+   + +S NPG      A+F +N  +S  ++ +   +D   V  L+A
Sbjct:   97 MARIDYAPKGQNPPHTHPRATEILTVFEGTLYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSNPPISDDVLAKAFQVDKKAVDWLQA 221          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GL41_ORYSJ (Germin-like protein 4-1 OS=Oryza sativa subsp. japonica GN=Os04g0617900 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.411e-16
Identity = 42/98 (42.86%), Postives = 61/98 (62.24%), Query Frame = 3
Query:    6 ARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSS----ANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFAN 287
            AR+D A  G  P HTHP A+EIL V+ G +  GF++S+     N  + K L  GD+ +FPQGL+HFQ+N+GA  A+   + +S NPG+     A+F +
Sbjct:  102 ARIDFAPNGQNPPHTHPRATEILTVLQGTLLVGFVTSNQPGGGNLQFTKLLGPGDVFVFPQGLIHFQLNNGAVPAVAIAALSSQNPGVITIANAVFGS 199          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GL34_ARATH (Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana GN=At5g61750 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.149e-16
Identity = 37/85 (43.53%), Postives = 59/85 (69.41%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGL 257
            ++R DL + G +P H+HP +SE+L VV G + AGF+ ++ N ++   L+KGD+ +FP+GLLHF ++ G + A  F  +NS NPG+
Sbjct:   92 VSRTDLERDGSVPFHSHPRSSEMLFVVKGVVFAGFVDTN-NKIFQTVLQKGDVFVFPKGLLHFCLSGGFEPATAFSFYNSQNPGV 175          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GL21_ARATH (Germin-like protein subfamily 2 member 1 OS=Arabidopsis thaliana GN=GLP4 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.149e-16
Identity = 42/93 (45.16%), Postives = 61/93 (65.59%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALF 281
            L+R+D A GG+ P HTHP A+E++ V+ G +  GF+++ AN +  ++LKKGD+  FP+GL+HFQ N+G   A    +FNS  PG Q     LF
Sbjct:   95 LSRIDYAPGGLNPPHTHPRATEVVFVLEGTLDVGFLTT-ANKLISQSLKKGDVFAFPKGLVHFQKNNGDVPASVIAAFNSQLPGTQSLGATLF 186          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GL117_ARATH (Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana GN=At5g39150 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.149e-16
Identity = 47/122 (38.52%), Postives = 70/122 (57.38%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKA 356
            L R+D A  G  P HTHP A+EIL++V G +  GF+SS+   N ++ K L  GD+ +FP G++HFQVN G   A+ F   +S N G+      +F +   ++  ++ Q   LD   VK L+A
Sbjct:   96 LVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDLEA 217          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GL115_ARATH (Germin-like protein subfamily 1 member 15 OS=Arabidopsis thaliana GN=At5g39120 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.149e-16
Identity = 47/122 (38.52%), Postives = 70/122 (57.38%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKA 356
            L R+D A  G  P HTHP A+EIL++V G +  GF+SS+   N ++ K L  GD+ +FP G++HFQVN G   A+ F   +S N G+      +F +   ++  ++ Q   LD   VK L+A
Sbjct:   96 LVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDLEA 217          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GL114_ARATH (Germin-like protein subfamily 1 member 14 OS=Arabidopsis thaliana GN=At5g39110 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.149e-16
Identity = 47/122 (38.52%), Postives = 70/122 (57.38%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKA 356
            L R+D A  G  P HTHP A+EIL++V G +  GF+SS+   N ++ K L  GD+ +FP G++HFQVN G   A+ F   +S N G+      +F +   ++  ++ Q   LD   VK L+A
Sbjct:   97 LVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDLEA 218          
The following BLAST results are available for this feature:
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
GL24_ORYSJ1.414e-1638.02Germin-like protein 2-4 OS=Oryza sativa subsp. jap... [more]
GL19_ARATH1.846e-1644.33Putative germin-like protein subfamily 1 member 9 ... [more]
GL12_ORYSJ1.846e-1636.29Germin-like protein 1-2 OS=Oryza sativa subsp. jap... [more]
GL121_ORYSJ1.846e-1639.20Germin-like protein 12-1 OS=Oryza sativa subsp. ja... [more]
GL41_ORYSJ2.411e-1642.86Germin-like protein 4-1 OS=Oryza sativa subsp. jap... [more]
GL34_ARATH3.149e-1643.53Germin-like protein subfamily 3 member 4 OS=Arabid... [more]
GL21_ARATH3.149e-1645.16Germin-like protein subfamily 2 member 1 OS=Arabid... [more]
GL117_ARATH3.149e-1638.52Germin-like protein subfamily 1 member 17 OS=Arabi... [more]
GL115_ARATH3.149e-1638.52Germin-like protein subfamily 1 member 15 OS=Arabi... [more]
GL114_ARATH3.149e-1638.52Germin-like protein subfamily 1 member 14 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01005 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01005 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623826 ID=BQ623826; Name=BQ623826; organism=Citrus sinensis; type=EST; length=551bp
GCTTGGCACGCCTAGATCTTGCAAAGGGTGGCGTAATCCCAATCCACACT
CATCCAGCTGCTTCCGAAATCCTTCTTGTTGTGCATGGCTGCATAACTGC
CGGGTTCATTTCCTCTTCAGCTAACACTGTTTACGTAAAGACGCTTAAGA
AGGGAGATATCATGATCTTTCCACAAGGGTTGTTGCATTTTCAAGTAAAT
TCCGGTGCGGACGGAGCCCTCGGTTTTGTTAGCTTCAACAGCCCGAATCC
TGGACTCCAAATCACCGATTTCGCCTTATTTGCTAACAACTTGTCTTCCC
AATTGGTGGAGCAGACCACTTTCCTTGACGATGCTACGGTGAAGAGGCTC
AAGGCTATCCTTGGTGGCACCGGCTAGGCTTATTAGTTACCACATTCTTC
ATTTGTAGTTTTGAGTTCTTAATTTCATTTAGTTGCTAATGTTTTTGATT
GTTGGAATTCACGAGTTAGTATTTTCTGTTCTCACTTCCCCTATCTTTTC
TTCTGAATAAATAAAATTTCTCTCATTTAAAAAAAAAAAAAAAAAAACTC
C
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