BQ623864 | Citrus Genome Database

Overview


Name	BQ623864
Unique Name	BQ623864
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	399

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.915e-20
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 268
            MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  221 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

HSP 2 Score: 92.0485 bits (227), Expect = 9.605e-19
Identity = 49/89 (55.06%), Postives = 52/89 (58.43%), Query Frame = 1

Query:    1 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWFLRSGHCHRQGTVRELGRPLGRPCQQQCLGLRHQLCPRK 267
            AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLA      F        +G +  L   L  P             P K
Sbjct:  177 AGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.915e-20
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 268
            MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  222 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

HSP 2 Score: 93.2041 bits (230), Expect = 4.311e-19
Identity = 50/89 (56.18%), Postives = 52/89 (58.43%), Query Frame = 1

Query:    1 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWFLRSGHCHRQGTVRELGRPLGRPCQQQCLGLRHQLCPRK 267
            AGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA      F        +G +  L   L  P             P K
Sbjct:  178 AGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.915e-20
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 268
            MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  220 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264

HSP 2 Score: 85.8853 bits (211), Expect = 6.883e-17
Identity = 45/89 (50.56%), Postives = 50/89 (56.18%), Query Frame = 1

Query:    1 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWFLRSGHCHRQGTVRELGRPLGRPCQQQCLGLRHQLCPRK 267
            AGGPLGE+ DPLYPGGSFDPLGLA+DPE  AELKVKE+KNGRLA      F        +G +  L   L  P             P K
Sbjct:  176 AGGPLGEIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.915e-20
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 268
            MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  220 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264

HSP 2 Score: 90.5077 bits (223), Expect = 2.794e-18
Identity = 49/89 (55.06%), Postives = 51/89 (57.30%), Query Frame = 1

Query:    1 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWFLRSGHCHRQGTVRELGRPLGRPCQQQCLGLRHQLCPRK 267
            AGGPLGEV DPLYPGGSFDPLGLADD EAFAELKVKEIKNGRLA      F        +G +  L   L  P             P K
Sbjct:  176 AGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.915e-20
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 268
            MFSMFGFFVQAIVTGKGPLENLADHLA+PVNNNAWAYATNFVPGK
Sbjct:  201 MFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245

HSP 2 Score: 92.8189 bits (229), Expect = 5.631e-19
Identity = 49/89 (55.06%), Postives = 52/89 (58.43%), Query Frame = 1

Query:    1 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWFLRSGHCHRQGTVRELGRPLGRPCQQQCLGLRHQLCPRK 267
            AGGPLGEVTDP+YPGGSFDPL LADDPEAFAELKVKEIKNGRLA      F        +G +  L   L  P             P K
Sbjct:  157 AGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.915e-20
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 268
            MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  222 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

HSP 2 Score: 81.2629 bits (199), Expect = 1.695e-15
Identity = 45/87 (51.72%), Postives = 47/87 (54.02%), Query Frame = 1

Query:    7 GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWFLRSGHCHRQGTVRELGRPLGRPCQQQCLGLRHQLCPRK 267
            GPLGE  D LYPGGSFDPLGLA DPEAFAELKVKEIKNGRLA      F        +G +  L   L  P             P K
Sbjct:  180 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.915e-20
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 268
            MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   80 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124

HSP 2 Score: 74.7146 bits (182), Expect = 1.587e-13
Identity = 42/87 (48.28%), Postives = 44/87 (50.57%), Query Frame = 1

Query:    7 GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWFLRSGHCHRQGTVRELGRPLGRPCQQQCLGLRHQLCPRK 267
            GPLGE  D LYPGGSFDPL    DPEAFAELKVKEIKNGRLA      F        +G +  L   L  P             P K
Sbjct:   38 GPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.915e-20
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 268
            MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  222 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

HSP 2 Score: 91.6633 bits (226), Expect = 1.254e-18
Identity = 49/89 (55.06%), Postives = 52/89 (58.43%), Query Frame = 1

Query:    1 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWFLRSGHCHRQGTVRELGRPLGRPCQQQCLGLRHQLCPRK 267
            AGGPLGEV DPLYPGGSFDPLGLADDPEAFAEL+VKEIKNGRLA      F        +G +  L   L  P             P K
Sbjct:  178 AGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.113e-20
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 268
            MFSMFGFFVQA+VTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  222 MFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266

HSP 2 Score: 88.5817 bits (218), Expect = 1.062e-17
Identity = 48/89 (53.93%), Postives = 51/89 (57.30%), Query Frame = 1

Query:    1 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWFLRSGHCHRQGTVRELGRPLGRPCQQQCLGLRHQLCPRK 267
            AG PLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLA      F        +G +  L   L  P             P K
Sbjct:  178 AGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.678e-20
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 268
            MFSMFGFFVQAIVTGKGP+ENLADHL DPVNNNAWAYATNFVPGK
Sbjct:  220 MFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264

HSP 2 Score: 82.4185 bits (202), Expect = 7.610e-16
Identity = 46/89 (51.69%), Postives = 48/89 (53.93%), Query Frame = 1

Query:    1 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWFLRSGHCHRQGTVRELGRPLGRPCQQQCLGLRHQLCPRK 267
            AGG LGEV DPLY GGSFDPLGL DDPE FAELKVKEIKNGRLA      F        +G +  L   L  P             P K
Sbjct:  176 AGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264

The following BLAST results are available for this feature:

BLAST of BQ623864 vs. ExPASy Swiss-Prot

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68


Match Name	E-value	Identity	Description
CB2A_SOLLC	3.915e-20	97.78	Chlorophyll a-b binding protein 1A, chloroplastic ...	[more]
CB24_PETSP	3.915e-20	97.78	Chlorophyll a-b binding protein 25, chloroplastic ...	[more]
CB23_APIGR	3.915e-20	97.78	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB22_HORVU	3.915e-20	97.78	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB21_SOYBN	3.915e-20	97.78	Chlorophyll a-b binding protein, chloroplastic (Fr...	[more]
CB21_SINAL	3.915e-20	97.78	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB21_RAPSA	3.915e-20	97.78	Chlorophyll a-b binding of LHCII type 1 protein (F...	[more]
CB21_PETSP	3.915e-20	97.78	Chlorophyll a-b binding protein 13, chloroplastic ...	[more]
CB25_NICPL	5.113e-20	95.56	Chlorophyll a-b binding protein E, chloroplastic O...	[more]
CB48_MAIZE	6.678e-20	95.56	Chlorophyll a-b binding protein 48, chloroplastic ...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_00944 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00944 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623864 ID=BQ623864; Name=BQ623864; organism=Citrus sinensis; type=EST; length=399bp
GCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAG
CTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCA
AGGTTAAGGAAATCAAGAATGGAAGGTTGGCGTATGTTCTCCATGTTTGG
TTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGG
CCGACCACTTGGCCGACCCTGTCAACAACAATGCCTGGGCCTACGCCACC
AACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAACATTAGTAGCGTGGA
AATTGGAATTGAGAGTGATTGGTTATTGATGTGACTCTATTTCAACTTGC
AAAACATGTGAATTATGTAATGTACTGCTACTACCAGTTTGAGGGGATT