BQ623865

Overview
NameBQ623865
Unique NameBQ623865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: CDC42_DROME (Cdc42 homolog OS=Drosophila melanogaster GN=Cdc42 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.060e-44
Identity = 84/151 (55.63%), Postives = 111/151 (73.51%), Query Frame = 1
Query:  274 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVY 720
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+    P +LVGT+ DLR++   L  +      PIT  QGE+L K + A  Y
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDENSTLEKLAKNKQKPITMEQGEKLAKELKAVKY 154          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: CDC42_ANOGA (Cdc42 homolog OS=Anopheles gambiae GN=Cdc42 PE=2 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 6.060e-44
Identity = 84/151 (55.63%), Postives = 111/151 (73.51%), Query Frame = 1
Query:  274 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVY 720
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+    P +LVGT+ DLR++   L  +      PIT  QGE+L K + A  Y
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDENSTLEKLAKNKQKPITLEQGEKLAKELKAVKY 154          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: CDC42_DROPS (Cdc42 homolog OS=Drosophila pseudoobscura pseudoobscura GN=Cdc42 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.914e-44
Identity = 84/151 (55.63%), Postives = 111/151 (73.51%), Query Frame = 1
Query:  274 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVY 720
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+    P +LVGT+ DLR++   L  +      PIT  QGE+L K + A  Y
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDETSTLEKLAKNKQKPITMEQGEKLAKELKAVKY 154          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: CDC42_CAEEL (Cell division control protein 42 homolog OS=Caenorhabditis elegans GN=cdc-42 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.303e-43
Identity = 83/151 (54.97%), Postives = 111/151 (73.51%), Query Frame = 1
Query:  274 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVY 720
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS+++ AS+EN+ +KW+PE+ H+    P +LVGT+ DLR+D   L  +      P++T  GE+L K + A  Y
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVAPASFENVREKWVPEISHHCSKTPFLLVGTQVDLRDDPGMLEKLAKNKQKPVSTDVGEKLAKELKAVKY 154          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RACB_ENTHI (Rho-related protein racB (Fragment) OS=Entamoeba histolytica GN=RACB PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.007e-43
Identity = 87/146 (59.59%), Postives = 106/146 (72.60%), Query Frame = 1
Query:  292 GDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLIN---HPGATPITTAQGEELKKLIGAAVY 720
            G G VGKTC+L+SYT+N FPT+YVPTVFDN+SA V+VD   +NLGLWDTAGQEDY+R+RPLSY   DVFLL FS++S  S+ENIS KW PE+ H+ P  P +L+GTK D+R D+Q   N        PIT+ QGE   K IGA  Y
Sbjct:    1 GAGGVGKTCLLVSYTTNAFPTEYVPTVFDNYSATVMVDSRPINLGLWDTAGQEDYDRIRPLSYPQTDVFLLCFSVVSPPSFENISSKWKPEVSHHCPNAPCLLIGTKIDIR-DEQTQTNKTCDKKIEPITSEQGEAKCKDIGALKY 145          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RACC_ENTHI (Rho-related protein racC OS=Entamoeba histolytica GN=RACC PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.928e-43
Identity = 84/151 (55.63%), Postives = 105/151 (69.54%), Query Frame = 1
Query:  274 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVY 720
            IK V VGDGAVGKTC+LI YT+N FP DY+PTVFDN+  ++      + L LWDTAGQE+Y++LRPLSY  A +FL+ FS+ S  SY+N+  KW PE+ H+AP VPI+LVGTK D R D   +  +   G T I TA+GEELK  I A  Y
Sbjct:    8 IKLVVVGDGAVGKTCLLICYTTNEFPKDYIPTVFDNYVVSLTAGTRQIQLALWDTAGQEEYDQLRPLSYSSASIFLICFSVTSSVSYDNVITKWHPEVIHFAPKVPIILVGTKLDTRNDPAIVKRLTEQGMTVINTAKGEELKNRIKAVKY 158          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: CDC42_RAT (Cell division control protein 42 homolog OS=Rattus norvegicus GN=Cdc42 PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 3.928e-43
Identity = 82/151 (54.30%), Postives = 110/151 (72.85%), Query Frame = 1
Query:  274 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVY 720
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR+D   +  +      PIT    E+L + + A  Y
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKY 154          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: CDC42_PIG (Cell division control protein 42 homolog OS=Sus scrofa GN=CDC42 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.928e-43
Identity = 82/151 (54.30%), Postives = 110/151 (72.85%), Query Frame = 1
Query:  274 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVY 720
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR+D   +  +      PIT    E+L + + A  Y
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKY 154          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: CDC42_MOUSE (Cell division control protein 42 homolog OS=Mus musculus GN=Cdc42 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.928e-43
Identity = 82/151 (54.30%), Postives = 110/151 (72.85%), Query Frame = 1
Query:  274 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVY 720
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR+D   +  +      PIT    E+L + + A  Y
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKY 154          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: CDC42_HUMAN (Cell division control protein 42 homolog OS=Homo sapiens GN=CDC42 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.928e-43
Identity = 82/151 (54.30%), Postives = 110/151 (72.85%), Query Frame = 1
Query:  274 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVY 720
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR+D   +  +      PIT    E+L + + A  Y
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKY 154          
The following BLAST results are available for this feature:
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDC42_DROME6.060e-4455.63Cdc42 homolog OS=Drosophila melanogaster GN=Cdc42 ... [more]
CDC42_ANOGA6.060e-4455.63Cdc42 homolog OS=Anopheles gambiae GN=Cdc42 PE=2 S... [more]
CDC42_DROPS7.914e-4455.63Cdc42 homolog OS=Drosophila pseudoobscura pseudoob... [more]
CDC42_CAEEL2.303e-4354.97Cell division control protein 42 homolog OS=Caenor... [more]
RACB_ENTHI3.007e-4359.59Rho-related protein racB (Fragment) OS=Entamoeba h... [more]
RACC_ENTHI3.928e-4355.63Rho-related protein racC OS=Entamoeba histolytica ... [more]
CDC42_RAT3.928e-4354.30Cell division control protein 42 homolog OS=Rattus... [more]
CDC42_PIG3.928e-4354.30Cell division control protein 42 homolog OS=Sus sc... [more]
CDC42_MOUSE3.928e-4354.30Cell division control protein 42 homolog OS=Mus mu... [more]
CDC42_HUMAN3.928e-4354.30Cell division control protein 42 homolog OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00945 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00945 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623865 ID=BQ623865; Name=BQ623865; organism=Citrus sinensis; type=EST; length=721bp
GCAATTCGGCAATCATGGTAAAGTTAAAGAATCGTAGCTAAAGTGGGTGC
TTTAATATATAGTCACCACCTTATTAAACGCCACCTTCACCCCTCCATTT
CTGTTCAAATTTCGAAACTCAAAGGCATTCAGCTTCTGTATCTTTGGCAT
TAATTCAAGGCTTTCAACATTTTCTTCAAAGTGTATATTGCTATTGATGG
AACAGAATAAAAGAAGGTGATAAGGAAAAAAAGGAGCTAGGATTCATCGA
AAATGATGAACACAGCTAGATTCATCAAATGTGTCACCGTCGGCGATGGA
GCTGTTGGCAAAACCTGCATGCTGATCTCTTATACAAGCAACACATTCCC
AACTGATTATGTGCCGACTGTGTTCGACAACTTCAGTGCTAACGTGGTGG
TTGATGGCAGCACAGTTAATCTCGGTCTATGGGATACTGCTGGACAGGAG
GATTACAACAGGCTTAGGCCTTTGAGTTACAGAGGTGCTGATGTGTTCTT
GTTGGCCTTTTCTCTCATCAGCAAAGCCAGCTATGAAAATATTTCAAAGA
AGTGGATCCCTGAGCTAAGGCATTATGCCCCAACTGTACCCATCGTCCTT
GTCGGAACAAAGCAGGATTTACGCGAGGACAAGCAGTACTTGATTAATCA
TCCAGGTGCTACGCCAATCACAACTGCTCAAGGGGAAGAATTGAAGAAGT
TGATTGGTGCTGCTGTTTACA
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