BQ623865

Overview
NameBQ623865
Unique NameBQ623865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RHOU_BOVIN (Rho-related GTP-binding protein RhoU OS=Bos taurus GN=RHOU PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.383e-40
Identity = 73/124 (58.87%), Postives = 100/124 (80.65%), Query Frame = 1
Query:  274 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLI 645
            +KCV VGDGAVGKT +++SYT+N +PT+Y+PT FDNFSA V VDG  V L L DTAGQ+++++LRPL Y  AD+FLL FS++  +S++N+S+KW+PE+R + P  PI+LVGT+ DLRED + LI
Sbjct:   47 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVKLQLCDTAGQDEFDKLRPLCYTNADIFLLCFSVVGPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLI 170          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RACH_DICDI (Rho-related protein racH OS=Dictyostelium discoideum GN=racH PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.065e-40
Identity = 82/155 (52.90%), Postives = 110/155 (70.97%), Query Frame = 1
Query:  274 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPE-LRHYAPTVPIVLVGTKQDLR-----EDKQYLINHPGATPITTAQGEELKKLIGAAVY 720
            IK + VGD +VGKTC+LISYT+N+FP +YVPTVFDN++AN +V+ + +NLGLWDTAG E+YN  RPLSY G DVF++ FSLIS+ S+EN+ KKW PE +++     PI+LVGTK DLR     E+K+          +T   GE+++  IGA  Y
Sbjct:    5 IKVMVVGDMSVGKTCLLISYTTNSFPGEYVPTVFDNYNANAIVNNTPINLGLWDTAGSEEYNSFRPLSYPGTDVFIICFSLISQTSFENVIKKWHPEIIQNMEQVPPIILVGTKLDLRGKGKSEEKE----------VTPEMGEQMRAAIGAYKY 149          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RHO1_CAEEL (Ras-like GTP-binding protein rhoA OS=Caenorhabditis elegans GN=rho-1 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.308e-40
Identity = 81/150 (54.00%), Postives = 102/150 (68.00%), Query Frame = 1
Query:  277 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVY 720
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV L+ FS+ S  S ENI +KW PE+RH+ P VPI+LVG K+DLR D Q +  +      P+   QG  + + IGA  Y
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPDVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVRHFCPNVPIILVGNKRDLRSDPQTVRELAKMKQEPVKPEQGRAIAEQIGAFAY 156          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RHOL_DROME (Ras-like GTP-binding protein RhoL OS=Drosophila melanogaster GN=RhoL PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.933e-40
Identity = 79/156 (50.64%), Postives = 105/156 (67.31%), Query Frame = 1
Query:  244 SSKMMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA 711
            ++ +  + R +K   VGDG VGKTCMLI+YT N FP +Y+PTVFDN + N+ VD    NL LWDTAGQEDY RLRPLSY   + FLL +S+ S+ S+EN+  KW PE+RH++  VP+VLVGTK DLR              +TT +G++++K I A
Sbjct:    2 TANITKSPRPLKITIVGDGMVGKTCMLITYTRNEFPEEYIPTVFDNHACNIAVDDRDYNLTLWDTAGQEDYERLRPLSYPSTNCFLLCYSISSRTSFENVKSKWWPEIRHFSAHVPVVLVGTKLDLRIPNSEKF-------VTTQEGKKMRKEIHA 150          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RHOA_EMENI (GTP-binding protein rhoA OS=Emericella nidulans GN=rhoA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.183e-39
Identity = 80/150 (53.33%), Postives = 105/150 (70.00%), Query Frame = 1
Query:  277 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVY 720
            K V VGDGA GKTC+LI ++  TFP  YVPTVF+N+ A+V VDG  V L LWDTAGQEDY+RLRPLSY  + V L+ F++ S  S +N+ +KWI E+ H+   +PI+LVG K+DLR D + +  +N     P+T  QGEE++K IGA  Y
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCQGLPIILVGCKKDLRHDPKTIEELNKTSQKPVTPEQGEEVRKKIGAYKY 156          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RHO1_CANAL (GTP-binding protein RHO1 OS=Candida albicans GN=RHO1 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.001e-38
Identity = 78/150 (52.00%), Postives = 106/150 (70.67%), Query Frame = 1
Query:  277 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVY 720
            K V VGDGA GKTC+LI ++  TFP  YVPTVF+N+ A+V VDG  V L LWDTAGQEDY+RLRPLSY  ++V L+ FS+ S  S +N+ +KWI E+ H+   VPI+LVG K DLR+D   +  +      P++T++G+++ + IGAA Y
Sbjct:   11 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRKVELALWDTAGQEDYDRLRPLSYPDSNVILICFSVDSPDSLDNVLEKWISEVLHFCQGVPIILVGCKSDLRDDPHTIEALRQQQQQPVSTSEGQQVAQRIGAADY 160          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RHOA_CANFA (Transforming protein RhoA OS=Canis familiaris GN=RHOA PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.308e-38
Identity = 78/150 (52.00%), Postives = 102/150 (68.00%), Query Frame = 1
Query:  277 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK--QYLINHPGATPITTAQGEELKKLIGAAVY 720
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR D+  +  +      P+   +G ++   IGA  Y
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPTEGRDMANRIGAFGY 156          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RHOA_RAT (Transforming protein RhoA OS=Rattus norvegicus GN=Rhoa PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.708e-38
Identity = 78/150 (52.00%), Postives = 102/150 (68.00%), Query Frame = 1
Query:  277 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK--QYLINHPGATPITTAQGEELKKLIGAAVY 720
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR D+  +  +      P+   +G ++   IGA  Y
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 156          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RHOA_PONAB (Transforming protein RhoA OS=Pongo abelii GN=RHOA PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.708e-38
Identity = 78/150 (52.00%), Postives = 102/150 (68.00%), Query Frame = 1
Query:  277 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK--QYLINHPGATPITTAQGEELKKLIGAAVY 720
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR D+  +  +      P+   +G ++   IGA  Y
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 156          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RHOA_MOUSE (Transforming protein RhoA OS=Mus musculus GN=Rhoa PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.708e-38
Identity = 78/150 (52.00%), Postives = 102/150 (68.00%), Query Frame = 1
Query:  277 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK--QYLINHPGATPITTAQGEELKKLIGAAVY 720
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR D+  +  +      P+   +G ++   IGA  Y
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 156          
The following BLAST results are available for this feature:
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHOU_BOVIN2.383e-4058.87Rho-related GTP-binding protein RhoU OS=Bos taurus... [more]
RACH_DICDI4.065e-4052.90Rho-related protein racH OS=Dictyostelium discoide... [more]
RHO1_CAEEL5.308e-4054.00Ras-like GTP-binding protein rhoA OS=Caenorhabditi... [more]
RHOL_DROME6.933e-4050.64Ras-like GTP-binding protein RhoL OS=Drosophila me... [more]
RHOA_EMENI1.183e-3953.33GTP-binding protein rhoA OS=Emericella nidulans GN... [more]
RHO1_CANAL1.001e-3852.00GTP-binding protein RHO1 OS=Candida albicans GN=RH... [more]
RHOA_CANFA1.308e-3852.00Transforming protein RhoA OS=Canis familiaris GN=R... [more]
RHOA_RAT1.708e-3852.00Transforming protein RhoA OS=Rattus norvegicus GN=... [more]
RHOA_PONAB1.708e-3852.00Transforming protein RhoA OS=Pongo abelii GN=RHOA ... [more]
RHOA_MOUSE1.708e-3852.00Transforming protein RhoA OS=Mus musculus GN=Rhoa ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00945 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00945 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623865 ID=BQ623865; Name=BQ623865; organism=Citrus sinensis; type=EST; length=721bp
GCAATTCGGCAATCATGGTAAAGTTAAAGAATCGTAGCTAAAGTGGGTGC
TTTAATATATAGTCACCACCTTATTAAACGCCACCTTCACCCCTCCATTT
CTGTTCAAATTTCGAAACTCAAAGGCATTCAGCTTCTGTATCTTTGGCAT
TAATTCAAGGCTTTCAACATTTTCTTCAAAGTGTATATTGCTATTGATGG
AACAGAATAAAAGAAGGTGATAAGGAAAAAAAGGAGCTAGGATTCATCGA
AAATGATGAACACAGCTAGATTCATCAAATGTGTCACCGTCGGCGATGGA
GCTGTTGGCAAAACCTGCATGCTGATCTCTTATACAAGCAACACATTCCC
AACTGATTATGTGCCGACTGTGTTCGACAACTTCAGTGCTAACGTGGTGG
TTGATGGCAGCACAGTTAATCTCGGTCTATGGGATACTGCTGGACAGGAG
GATTACAACAGGCTTAGGCCTTTGAGTTACAGAGGTGCTGATGTGTTCTT
GTTGGCCTTTTCTCTCATCAGCAAAGCCAGCTATGAAAATATTTCAAAGA
AGTGGATCCCTGAGCTAAGGCATTATGCCCCAACTGTACCCATCGTCCTT
GTCGGAACAAAGCAGGATTTACGCGAGGACAAGCAGTACTTGATTAATCA
TCCAGGTGCTACGCCAATCACAACTGCTCAAGGGGAAGAATTGAAGAAGT
TGATTGGTGCTGCTGTTTACA
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