BQ623928

Overview
NameBQ623928
Unique NameBQ623928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623928 vs. ExPASy Swiss-Prot
Match: VATA_PLAF7 (V-type proton ATPase catalytic subunit A OS=Plasmodium falciparum (isolate 3D7) GN=vapA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.759e-27
Identity = 62/150 (41.33%), Postives = 94/150 (62.67%), Query Frame = 1
Query:    1 DPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRALEDE 450
            D DF+++R K  ++LQ+E DLN+IVQLVGKD+L+E  K+ +E AK++RED+L QNAF+ YD  CP  K+V MMR I HFY    + +++    + +KI +  I + L     ++   KFE+P   +      FK L E++T G R L ++
Sbjct:  463 DQDFLSLRQKISDILQQESDLNDIVQLVGKDSLSEDQKVVMEVAKIIREDFLQQNAFSDYDYMCPLQKTVGMMRIICHFYAQCLRTLQEYDSRE-RKIGWGSIYNTLRPTINKITHMKFENPKNSDEYFKKYFKALEEEITVGLRNLMEK 611          
BLAST of BQ623928 vs. ExPASy Swiss-Prot
Match: VATA_NEUCR (V-type proton ATPase catalytic subunit A OS=Neurospora crassa GN=vma-1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.790e-25
Identity = 54/149 (36.24%), Postives = 96/149 (64.43%), Query Frame = 1
Query:    4 PDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRALEDE 450
            PDF  +R + R++L   ++L+++VQLVGK AL++ DKITL+ A L++ED+L QN ++ YD+FCP +K+ WMM+ ++ F++ A +A+ +G         +  ++    DL  +L S KFE P+EG+  +  K++ + + +   F ++ DE
Sbjct:  466 PDFPRLRDRIRQLLSDSEELDQVVQLVGKSALSDPDKITLDMATLIKEDFLQQNGYSDYDQFCPIWKTEWMMKLMMGFHDEAQKAIAQGQ-------NWNKVREATQDLQAQLKSLKFEVPSEGQEKICKKYEAIQQQMLDKFASVIDE 607          
BLAST of BQ623928 vs. ExPASy Swiss-Prot
Match: VATA_ENCCU (V-type proton ATPase catalytic subunit A OS=Encephalitozoon cuniculi GN=VMA1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.105e-24
Identity = 58/144 (40.28%), Postives = 91/144 (63.19%), Query Frame = 1
Query:    1 DPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGF 432
            DP FI  RTK RE+LQ +DDL+EIVQLVGK+AL+E +K+ L+ +KL++ED+L QN ++ YD +CPF K+  M+RNII +++ +  A+         K++++ I+    D+FY L+  KF      +  +  K  KL  ++   F
Sbjct:  468 DPGFIVNRTKCREILQLDDDLSEIVQLVGKNALSETEKLILDISKLIKEDFLQQNGYSRYDNYCPFTKTRLMLRNIILYFDNSKNAI------TNYKLSWSTIRKETEDVFYGLMKMKF---VMADKEMEPKLNKLKREIEGVF 602          
BLAST of BQ623928 vs. ExPASy Swiss-Prot
Match: VATA_YEAST (V-type proton ATPase catalytic subunit A OS=Saccharomyces cerevisiae GN=TFP1 PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 9.987e-23
Identity = 54/148 (36.49%), Postives = 89/148 (60.14%), Query Frame = 1
Query:    4 PDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRALED 447
            P+F  +R + +E+L   ++L ++VQLVGK AL++ DKITL+ A L++ED+L QN ++ YD FCP +K+  MMR  I +++ A +AV  GA        ++ +    GD+ + + S KF +P+ GE  +  +F+KL   +   F    D
Sbjct:  931 PEFPVLRDRMKEILSNAEELEQVVQLVGKSALSDSDKITLDVATLIKEDFLQQNGYSTYDAFCPIWKTFDMMRAFISYHDEAQKAVANGA-------NWSKLADSTGDVKHAVSSSKFFEPSRGEKEVHGEFEKLLSTMQERFAESTD 1071          
BLAST of BQ623928 vs. ExPASy Swiss-Prot
Match: VATA_ASHGO (V-type proton ATPase catalytic subunit A OS=Ashbya gossypii GN=VMA1 PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.225e-22
Identity = 51/148 (34.46%), Postives = 89/148 (60.14%), Query Frame = 1
Query:    4 PDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRALED 447
            P+F  +R + +E+L   ++L ++VQLVGK AL++ DKI L+ A L++ED+L QN ++ YD FCP +K+  MM+  + +++ A ++V  GA        + ++    GD+ + + S KF +P+ GE  + A+F+KL   +   F    D
Sbjct:  477 PEFPVLRDRIKEILSNAEELEQVVQLVGKSALSDKDKIVLDVATLIKEDFLQQNGYSTYDAFCPIWKTYDMMKAFVSYFDEAQKSVSNGA-------NWAVLSEATGDVKHAVSSSKFFEPSRGEREVHAEFEKLFASIQERFAESTD 617          
BLAST of BQ623928 vs. ExPASy Swiss-Prot
Match: VATA_CANTR (V-type proton ATPase catalytic subunit A OS=Candida tropicalis GN=VMA1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.884e-21
Identity = 49/125 (39.20%), Postives = 79/125 (63.20%), Query Frame = 1
Query:    4 PDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGE 378
            P+F  +R K RE+L   ++L ++VQLVGK AL++ DKITL+ A L++ED+L QN ++ YD FCP +K+  MMR  I +Y+ A +A+  GA        ++ +     D+ + + S KF +P+ G+
Sbjct:  948 PEFPQLRDKIREILSNAEELEQVVQLVGKSALSDSDKITLDVATLIKEDFLQQNGYSSYDAFCPIWKTFDMMRAFISYYDEAQKAIANGA-------QWSKLAESTSDVKHAVSSAKFFEPSRGQ 1065          
BLAST of BQ623928 vs. ExPASy Swiss-Prot
Match: VATA_STAMF (V-type ATP synthase alpha chain OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=atpA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.007e-19
Identity = 57/150 (38.00%), Postives = 87/150 (58.00%), Query Frame = 1
Query:    1 DPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRALEDE 450
            DP +  +R KA  +LQ+E +L E+V+LVG +AL E DK+ LE A+++RED+L QNAF   D +CP  K+V MM+ I+ FY L  +A+++G  M  +KI     + ++  +   + +  FED           FK L ED+   F +L  E
Sbjct:  449 DPSWRELREKALAILQKEAELEELVRLVGAEALPEEDKLLLEVARMIREDFLQQNAFHEIDTYCPPRKAVLMMKAIMLFYELGLEAIKRGISM--EKIRELKSRVKIARM-KEIPNIDFED----------AFKSLFEDIRRDFESLMKE 585          
BLAST of BQ623928 vs. ExPASy Swiss-Prot
Match: VATA_METKA (V-type ATP synthase alpha chain OS=Methanopyrus kandleri GN=atpA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.007e-19
Identity = 45/92 (48.91%), Postives = 64/92 (69.57%), Query Frame = 1
Query:    7 DFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMD 282
            D+  +R +A E+LQRE +L EIVQLVG DAL E +++ LE A+++RED+L QNAF   D +CP  K   M++ I+HF   A +AV+KG  +D
Sbjct:  456 DWRELRDEAMEILQRESELEEIVQLVGPDALPESERLILEVARMIREDFLQQNAFHEVDTYCPPEKQYEMLKTILHFKERAEEAVDKGVPVD 547          
BLAST of BQ623928 vs. ExPASy Swiss-Prot
Match: VATA_THEON (V-type ATP synthase alpha chain OS=Thermococcus onnurineus (strain NA1) GN=atpA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.699e-19
Identity = 54/140 (38.57%), Postives = 84/140 (60.00%), Query Frame = 1
Query:    1 DPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDL 420
            DP++  +R +A E+LQ+E +L EIV++VG DAL + +K  L  A++LREDYL Q+AF   D +CP  K V MMR I++FY    +AV++G  +D  +I    ++ ++G +       KFE   E   AL+ +     E+L
Sbjct:  449 DPEWRAMRDRAMELLQKEAELQEIVRIVGPDALPDREKAVLIVARMLREDYLQQDAFDEVDTYCPPKKQVTMMRVILNFYERTMEAVDRGVPVD--EIAKLPVREKIGRM-------KFEPEIEKVAALIDETNAQFEEL 579          
BLAST of BQ623928 vs. ExPASy Swiss-Prot
Match: VATA_PYRAB (V-type ATP synthase alpha chain OS=Pyrococcus abyssi GN=atpA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.325e-18
Identity = 52/140 (37.14%), Postives = 83/140 (59.29%), Query Frame = 1
Query:    1 DPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDL 420
            DP++  +R KA E+LQ+E +L EIV++VG DAL E ++  L  A++LREDYL Q+AF   D +CP  K V MMR +++FY+   +A+ +G  +  ++I    ++  +G +       KFE       AL+ K  +  E+L
Sbjct:  881 DPEWKAMRDKAMELLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMEAISRGVPL--EEIAKLPVREEIGRM-------KFEPDVGKIKALIDKTNEQFEEL 1011          
The following BLAST results are available for this feature:
BLAST of BQ623928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
VATA_PLAF71.759e-2741.33V-type proton ATPase catalytic subunit A OS=Plasmo... [more]
VATA_NEUCR4.790e-2536.24V-type proton ATPase catalytic subunit A OS=Neuros... [more]
VATA_ENCCU3.105e-2440.28V-type proton ATPase catalytic subunit A OS=Enceph... [more]
VATA_YEAST9.987e-2336.49V-type proton ATPase catalytic subunit A OS=Saccha... [more]
VATA_ASHGO2.225e-2234.46V-type proton ATPase catalytic subunit A OS=Ashbya... [more]
VATA_CANTR1.884e-2139.20V-type proton ATPase catalytic subunit A OS=Candid... [more]
VATA_STAMF3.007e-1938.00V-type ATP synthase alpha chain OS=Staphylothermus... [more]
VATA_METKA3.007e-1948.91V-type ATP synthase alpha chain OS=Methanopyrus ka... [more]
VATA_THEON6.699e-1938.57V-type ATP synthase alpha chain OS=Thermococcus on... [more]
VATA_PYRAB3.325e-1837.14V-type ATP synthase alpha chain OS=Pyrococcus abys... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01019 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01019 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623928 ID=BQ623928; Name=BQ623928; organism=Citrus sinensis; type=EST; length=622bp
GATCCGGATTTTATTAACATCAGGACAAAGGCTAGAGAGGTGCTGCAGAG
AGAAGATGACCTGAATGAAATTGTGCAACTTGTCGGAAAGGATGCTTTGG
CTGAAGGAGATAAGATTACGCTAGAGACTGCTAAGCTTTTGAGGGAGGAC
TATCTTGCTCAGAACGCATTTACTCCATATGACAAGTTCTGCCCTTTCTA
CAAGTCTGTTTGGATGATGCGTAACATTATCCATTTCTATAACTTGGCCA
ATCAGGCCGTAGAGAAAGGAGCTGGTATGGATGGTCAGAAGATAACTTAC
ACCCTTATCAAGCATCGGCTGGGAGATCTATTTTACAGATTAGTATCACA
GAAGTTTGAGGACCCAGCAGAAGGAGAACCAGCTCTGGTTGCTAAATTCA
AAAAGCTGCATGAGGATCTGACCGCTGGTTTCCGCGCCCTCGAGGATGAA
ACTCGATGATTGAAAGTGTCAAGTTAGATTCTTTGTAGTCCCAGCGGCAC
CTCTGATCTTACGGTAACAACAGTTGGCTTCTCGATGTTCCATTGAATGG
AGAACCAAAATGTTGGTGGGTCCATGTTATGCCCTTTTGCAGTGCTTGTT
TGGCCTTCTAGTTCAGGGTGGG
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