BQ623928

Overview
NameBQ623928
Unique NameBQ623928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623928 vs. ExPASy Swiss-Prot
Match: VATA_THESI (V-type ATP synthase alpha chain OS=Thermococcus sp. (strain KI) GN=atpA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.342e-18
Identity = 53/140 (37.86%), Postives = 82/140 (58.57%), Query Frame = 1
Query:    1 DPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDL 420
            DP++  +R  A  +LQ+E +L EIV++VG DAL + +K  L   ++LREDYL Q+AF   D +CP  K V MMR I++FY    QAV++G  +D  +I    ++ ++G +       KFE   E   AL+ +  +  E+L
Sbjct:  449 DPEWRKMRDTAMALLQKEAELQEIVRIVGPDALPDREKAILIVTRMLREDYLQQDAFDEVDTYCPPKKQVTMMRVILNFYEKTMQAVDRGVPVD--EIAKLPVREKIGRM-------KFEPDVEKVRALIDETNQQFEEL 579          
BLAST of BQ623928 vs. ExPASy Swiss-Prot
Match: VATA_THEGJ (V-type ATP synthase alpha chain OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=atpA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.342e-18
Identity = 53/140 (37.86%), Postives = 82/140 (58.57%), Query Frame = 1
Query:    1 DPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDL 420
            DP++  +R  A  +LQ+E +L EIV++VG DAL + +K  L   ++LREDYL Q+AF   D +CP  K V MMR I++FYN   +AV++G  +D  +I    ++ ++G +       KFE   E   AL+ +     E+L
Sbjct:  449 DPEWRKMRDTAMALLQKEAELQEIVRIVGPDALPDREKAILIVTRMLREDYLQQDAFDEVDTYCPPKKQVTMMRVILNFYNRTMEAVDRGVPVD--EIARLPVREKIGRM-------KFEPDVEKIRALIDETNAQFEEL 579          
BLAST of BQ623928 vs. ExPASy Swiss-Prot
Match: VATA_PYRKO (V-type ATP synthase alpha chain OS=Pyrococcus kodakaraensis GN=atpA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.342e-18
Identity = 53/140 (37.86%), Postives = 82/140 (58.57%), Query Frame = 1
Query:    1 DPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDL 420
            DP++  +R  A  +LQ+E +L EIV++VG DAL + +K  L   ++LREDYL Q+AF   D +CP  K V MMR I++FY    QAV++G  +D  +I    ++ ++G +       KFE   E   AL+ +  +  E+L
Sbjct:  449 DPEWRKMRDTAMALLQKEAELQEIVRIVGPDALPDREKAILIVTRMLREDYLQQDAFDEVDTYCPPKKQVTMMRVILNFYEKTMQAVDRGVPVD--EIAKLPVREKIGRM-------KFEPDVEKVRALIDETNQQFEEL 579          
BLAST of BQ623928 vs. ExPASy Swiss-Prot
Match: VATA_PYRFU (V-type ATP synthase alpha chain OS=Pyrococcus furiosus GN=atpA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.407e-18
Identity = 53/146 (36.30%), Postives = 83/146 (56.85%), Query Frame = 1
Query:    1 DPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRA 438
            DP++  +R KA E+LQ+E +L EIV++VG DAL E ++  L  A++LREDYL Q+AF   D +CP  K V MMR ++ FY     A+ +G  +  ++I    ++  +G +       KFE   E   AL+ K  +  ++L   + A
Sbjct:  877 DPEWRRMRDKAMELLQKEAELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPQKQVTMMRVLMTFYERTMDAISRGVPL--EEIAKLPVREEIGRM-------KFEPDIEKIRALIDKTNEQFDELLKKYGA 1013          
BLAST of BQ623928 vs. ExPASy Swiss-Prot
Match: VATA_DESSY (V-type ATP synthase alpha chain OS=Desulfurococcus sp. (strain SY) GN=atpA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.650e-17
Identity = 52/140 (37.14%), Postives = 82/140 (58.57%), Query Frame = 1
Query:    1 DPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDL 420
            DP++  +R  A  +LQ+E +L EIV++VG DAL + +K  L   ++LREDYL Q+AF   D +CP  K V MMR I++FY    +AV++G  +D  +I    ++ ++G +       KFE   E   AL+ +  +  E+L
Sbjct:  449 DPEWRKMRDTAMALLQKEAELQEIVRIVGPDALPDREKAILIVTRMLREDYLQQDAFDEVDTYCPPKKQVTMMRVILNFYERTMEAVDRGVPVD--EIAKLPVREKIGRM-------KFEPDIEKIRALIDETNEQFEEL 579          
BLAST of BQ623928 vs. ExPASy Swiss-Prot
Match: VATA_METBU (V-type ATP synthase alpha chain OS=Methanococcoides burtonii (strain DSM 6242) GN=atpA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.815e-17
Identity = 54/137 (39.42%), Postives = 79/137 (57.66%), Query Frame = 1
Query:    7 DFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHED 417
            D+  +R  A ++LQ+E +L EIVQLVG DAL E  ++TLE A+++RE +L QNAF P D +CPF K   ++++I  +  LA  A+E G  M+  KI     K  L  +       KFE+    + AL    KK+ E+
Sbjct:  446 DWTQLRDDAMDLLQQESELQEIVQLVGSDALPEDQQLTLEVARMVREYFLQQNAFHPVDTYCPFDKQYKLLKSITRYGELATAALESGVPMN--KIITIKSKDELAKV-------KFEE--NFDAALDVVMKKMDEE 571          
BLAST of BQ623928 vs. ExPASy Swiss-Prot
Match: VATA_PYRHO (V-type ATP synthase alpha chain OS=Pyrococcus horikoshii GN=atpA PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.676e-17
Identity = 50/140 (35.71%), Postives = 82/140 (58.57%), Query Frame = 1
Query:    1 DPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDL 420
            DP++  +R KA  +LQ+E +L EIV++VG DAL E ++  L  A++LREDYL Q+AF   D +CP  K V MMR +++FY+   +A+ +G  +  ++I    ++  +G +       KFE       +L+ K  +  E+L
Sbjct:  828 DPEWKAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMEAINRGVPL--EEIAKLPVREEIGRM-------KFERDVSKIRSLIDKTNEQFEEL 958          
BLAST of BQ623928 vs. ExPASy Swiss-Prot
Match: VATA_METTH (V-type ATP synthase alpha chain OS=Methanobacterium thermoautotrophicum GN=atpA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.801e-17
Identity = 44/91 (48.35%), Postives = 62/91 (68.13%), Query Frame = 1
Query:    1 DPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGA 273
            DP++   R +A  +LQ+E +L EIVQLVG DAL + ++ITLET +++RED+L QNA+   D +C   K   M+R II F+  A  A+EKGA
Sbjct:  451 DPEWRKFRDEAMALLQKEAELQEIVQLVGPDALPDRERITLETTRMIREDFLQQNAYHEVDTYCSPSKQFEMLRTIIMFHRNATAALEKGA 541          
BLAST of BQ623928 vs. ExPASy Swiss-Prot
Match: VATA_METS3 (V-type ATP synthase alpha chain OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=atpA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.801e-17
Identity = 53/130 (40.77%), Postives = 74/130 (56.92%), Query Frame = 1
Query:    7 DFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAK 396
            D+   R +A  +LQ+E +L EIVQLVG DAL E D+ TLET ++LRED+L QNAF   D +CP  K   M++ I+ F+  A  AV  G G+  Q I    +K  +G + Y +   +F    E   A + K
Sbjct:  453 DWRETRDQAMILLQKESELQEIVQLVGPDALPEADQATLETTRMLREDFLQQNAFDDIDTYCPPVKQYNMLKTILLFHKEALAAV--GRGVPIQNIVALPVKEEIGKMKY-IPQDEFAAKCEEIQAAITK 579          
BLAST of BQ623928 vs. ExPASy Swiss-Prot
Match: VATA_METJA (V-type ATP synthase alpha chain OS=Methanocaldococcus jannaschii GN=atpA PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.070e-16
Identity = 46/111 (41.44%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    4 PDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFY 336
            PD+  +R +A  +LQ+E +L EIVQLVG DAL + +++ LE A++LRED+L Q+AF   D +CP  K   M++ I+ FY  A +AVE+  G++  KI    +K  +  + Y
Sbjct:  453 PDWRQLRDEAMSLLQKEAELQEIVQLVGPDALPDRERVILEVARMLREDFLQQDAFDEVDTYCPPMKQYLMLKIIMTFYQEALKAVER--GVEPAKILGVSVKQDIARMKY 561          
The following BLAST results are available for this feature:
BLAST of BQ623928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
VATA_THESI4.342e-1837.86V-type ATP synthase alpha chain OS=Thermococcus sp... [more]
VATA_THEGJ4.342e-1837.86V-type ATP synthase alpha chain OS=Thermococcus ga... [more]
VATA_PYRKO4.342e-1837.86V-type ATP synthase alpha chain OS=Pyrococcus koda... [more]
VATA_PYRFU7.407e-1836.30V-type ATP synthase alpha chain OS=Pyrococcus furi... [more]
VATA_DESSY1.650e-1737.14V-type ATP synthase alpha chain OS=Desulfurococcus... [more]
VATA_METBU2.815e-1739.42V-type ATP synthase alpha chain OS=Methanococcoide... [more]
VATA_PYRHO3.676e-1735.71V-type ATP synthase alpha chain OS=Pyrococcus hori... [more]
VATA_METTH4.801e-1748.35V-type ATP synthase alpha chain OS=Methanobacteriu... [more]
VATA_METS34.801e-1740.77V-type ATP synthase alpha chain OS=Methanobrevibac... [more]
VATA_METJA1.070e-1641.44V-type ATP synthase alpha chain OS=Methanocaldococ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01019 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01019 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623928 ID=BQ623928; Name=BQ623928; organism=Citrus sinensis; type=EST; length=622bp
GATCCGGATTTTATTAACATCAGGACAAAGGCTAGAGAGGTGCTGCAGAG
AGAAGATGACCTGAATGAAATTGTGCAACTTGTCGGAAAGGATGCTTTGG
CTGAAGGAGATAAGATTACGCTAGAGACTGCTAAGCTTTTGAGGGAGGAC
TATCTTGCTCAGAACGCATTTACTCCATATGACAAGTTCTGCCCTTTCTA
CAAGTCTGTTTGGATGATGCGTAACATTATCCATTTCTATAACTTGGCCA
ATCAGGCCGTAGAGAAAGGAGCTGGTATGGATGGTCAGAAGATAACTTAC
ACCCTTATCAAGCATCGGCTGGGAGATCTATTTTACAGATTAGTATCACA
GAAGTTTGAGGACCCAGCAGAAGGAGAACCAGCTCTGGTTGCTAAATTCA
AAAAGCTGCATGAGGATCTGACCGCTGGTTTCCGCGCCCTCGAGGATGAA
ACTCGATGATTGAAAGTGTCAAGTTAGATTCTTTGTAGTCCCAGCGGCAC
CTCTGATCTTACGGTAACAACAGTTGGCTTCTCGATGTTCCATTGAATGG
AGAACCAAAATGTTGGTGGGTCCATGTTATGCCCTTTTGCAGTGCTTGTT
TGGCCTTCTAGTTCAGGGTGGG
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