C21829

Overview
NameC21829
Unique NameC21829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_DANRE (Elongation factor 1-alpha OS=Danio rerio GN=eef1a PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.361e-22
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ M KG FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_CHICK (Elongation factor 1-alpha 1 OS=Gallus gallus GN=EEF1A PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.361e-22
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ M KG FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A3_HUMAN (Putative elongation factor 1-alpha-like 3 OS=Homo sapiens GN=EEF1AL3 PE=5 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.361e-22
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ M KG FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A2_RAT (Elongation factor 1-alpha 2 OS=Rattus norvegicus GN=Eef1a2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.361e-22
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ M KG FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A2_RABIT (Elongation factor 1-alpha 2 OS=Oryctolagus cuniculus GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.361e-22
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ M KG FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A2_MOUSE (Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef1a2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.361e-22
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ M KG FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A2_HUMAN (Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.361e-22
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ M KG FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A2_BOVIN (Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.361e-22
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ M KG FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A1_RAT (Elongation factor 1-alpha 1 OS=Rattus norvegicus GN=Eef1a1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.361e-22
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ M KG FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A1_RABIT (Elongation factor 1-alpha 1 OS=Oryctolagus cuniculus GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.361e-22
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ M KG FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAW 58
The following BLAST results are available for this feature:
BLAST of C21829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
EF1A_DANRE7.361e-2282.76Elongation factor 1-alpha OS=Danio rerio GN=eef1a ... [more]
EF1A_CHICK7.361e-2282.76Elongation factor 1-alpha 1 OS=Gallus gallus GN=EE... [more]
EF1A3_HUMAN7.361e-2282.76Putative elongation factor 1-alpha-like 3 OS=Homo ... [more]
EF1A2_RAT7.361e-2282.76Elongation factor 1-alpha 2 OS=Rattus norvegicus G... [more]
EF1A2_RABIT7.361e-2282.76Elongation factor 1-alpha 2 OS=Oryctolagus cunicul... [more]
EF1A2_MOUSE7.361e-2282.76Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef... [more]
EF1A2_HUMAN7.361e-2282.76Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF... [more]
EF1A2_BOVIN7.361e-2282.76Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A... [more]
EF1A1_RAT7.361e-2282.76Elongation factor 1-alpha 1 OS=Rattus norvegicus G... [more]
EF1A1_RABIT7.361e-2282.76Elongation factor 1-alpha 1 OS=Oryctolagus cunicul... [more]

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Properties
Property NameValue
Genbank descriptionC21829 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSJ-37R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21829 ID=C21829; Name=C21829; organism=Citrus sinensis; type=EST; length=259bp
GGCACGAGCCGAAGGGCGNCGAGAGAGAACCATTTTCGCGAATATCATTT
TAATAAGGTTTTTTCTAGATTTNCCTAATGGGTAAGGAGAAGACTCACAT
CAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCG
GACACTNGATCTACAAGCTTGGTGGTATTNANAAGCGTGTTATCGANAGG
TTCGAGAAGGAAGCTTCTNAGATGAACAAGGGGTNATTCAAATACGCCTG
GNTCTCGAN
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