C21829

Overview
NameC21829
Unique NameC21829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_ONCVO (Elongation factor 1-alpha OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.614e-22
Identity = 48/58 (82.76%), Postives = 49/58 (84.48%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA  M KG FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_BOMMO (Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.614e-22
Identity = 48/58 (82.76%), Postives = 49/58 (84.48%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA  M KG FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A4_OSCTI (Elongation factor 1-alpha 4 OS=Oscheius tipulae GN=eft-4 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.614e-22
Identity = 48/58 (82.76%), Postives = 49/58 (84.48%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA  M KG FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A2_OSCTI (Elongation factor 1-alpha 2 OS=Oscheius tipulae GN=eft-2 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.614e-22
Identity = 48/58 (82.76%), Postives = 49/58 (84.48%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA  M KG FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.614e-22
Identity = 49/58 (84.48%), Postives = 51/58 (87.93%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK HI+IVVIGHVDSGKSTTTGH IYKLGGI KRVI RFEKEA+ MNK  FKYAW
Sbjct:    1 MGKEKIHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A1_OSCTI (Elongation factor 1-alpha 1 OS=Oscheius tipulae GN=eft-1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.614e-22
Identity = 48/58 (82.76%), Postives = 49/58 (84.48%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA  M KG FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.614e-22
Identity = 49/58 (84.48%), Postives = 51/58 (87.93%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK HI+IVVIGHVDSGKSTTTGH IYKLGGI KRVI RFEKEA+ MNK  FKYAW
Sbjct:    1 MGKEKIHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.640e-21
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHIN+VVIGHVDSGKSTTTGH IYKLGGI +R I +FEKE++ M KG FKYAW
Sbjct:    1 MGKEKTHINLVVIGHVDSGKSTTTGHIIYKLGGIDRRTIEKFEKESAEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_PICGU (Elongation factor 1-alpha OS=Pichia guilliermondii GN=TEF1 PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.797e-21
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTH+N+VVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ + KG FKYAW
Sbjct:    1 MGKEKTHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.797e-21
Identity = 49/58 (84.48%), Postives = 49/58 (84.48%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK HINIVVIGHVDSGKSTTT H IYKLGGI KRVI RFEKEA  MNK  FKYAW
Sbjct:    1 MGKEKVHINIVVIGHVDSGKSTTTVHVIYKLGGIDKRVIERFEKEADEMNKRSFKYAW 58
The following BLAST results are available for this feature:
BLAST of C21829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
EF1A_ONCVO9.614e-2282.76Elongation factor 1-alpha OS=Onchocerca volvulus P... [more]
EF1A_BOMMO9.614e-2282.76Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1[more]
EF1A4_OSCTI9.614e-2282.76Elongation factor 1-alpha 4 OS=Oscheius tipulae GN... [more]
EF1A2_OSCTI9.614e-2282.76Elongation factor 1-alpha 2 OS=Oscheius tipulae GN... [more]
EF1A2_DAUCA9.614e-2284.48Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]
EF1A1_OSCTI9.614e-2282.76Elongation factor 1-alpha 1 OS=Oscheius tipulae GN... [more]
EF1A1_HORVU9.614e-2284.48Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]
EF1A_PLAFK1.640e-2179.31Elongation factor 1-alpha OS=Plasmodium falciparum... [more]
EF1A_PICGU2.797e-2177.59Elongation factor 1-alpha OS=Pichia guilliermondii... [more]
EF1A_PEA2.797e-2184.48Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionC21829 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSJ-37R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21829 ID=C21829; Name=C21829; organism=Citrus sinensis; type=EST; length=259bp
GGCACGAGCCGAAGGGCGNCGAGAGAGAACCATTTTCGCGAATATCATTT
TAATAAGGTTTTTTCTAGATTTNCCTAATGGGTAAGGAGAAGACTCACAT
CAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCG
GACACTNGATCTACAAGCTTGGTGGTATTNANAAGCGTGTTATCGANAGG
TTCGAGAAGGAAGCTTCTNAGATGAACAAGGGGTNATTCAAATACGCCTG
GNTCTCGAN
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