C21829

Overview
NameC21829
Unique NameC21829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_ARTSA (Elongation factor 1-alpha OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 4.771e-21
Identity = 47/58 (81.03%), Postives = 48/58 (82.76%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK HINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA  M KG FKYAW
Sbjct:    1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_APIME (Elongation factor 1-alpha OS=Apis mellifera PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.771e-21
Identity = 47/58 (81.03%), Postives = 48/58 (82.76%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK HINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA  M KG FKYAW
Sbjct:    1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.771e-21
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK HI+IVVIGHVDSGKSTTTGH IYKLGGI KRVI  FEKEA+ MNK  FKYAW
Sbjct:    1 MGKEKIHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIESFEKEAAEMNKRSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A2_DROME (Elongation factor 1-alpha 2 OS=Drosophila melanogaster GN=Ef1alpha100E PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 4.771e-21
Identity = 47/58 (81.03%), Postives = 48/58 (82.76%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK HINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA  M KG FKYAW
Sbjct:    1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A1_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.771e-21
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTH+N+VVIGHVDSGKSTTTGH IYK GGI KR I  FEKEA+ + KG FKYAW
Sbjct:    1 MGKEKTHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEEFEKEAAELGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A1_DROME (Elongation factor 1-alpha 1 OS=Drosophila melanogaster GN=Ef1alpha48D PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 4.771e-21
Identity = 47/58 (81.03%), Postives = 48/58 (82.76%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK HINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA  M KG FKYAW
Sbjct:    1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_YEAST (Elongation factor 1-alpha OS=Saccharomyces cerevisiae GN=TEF1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.232e-21
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK+HIN+VVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ + KG FKYAW
Sbjct:    1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_AURPU (Elongation factor 1-alpha OS=Aureobasidium pullulans GN=TEF1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.232e-21
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK+HIN+VVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ + KG FKYAW
Sbjct:    1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_EUGGR (Elongation factor 1-alpha OS=Euglena gracilis GN=TEF PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.139e-21
Identity = 46/58 (79.31%), Postives = 49/58 (84.48%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK HI++VVIGHVDSGKSTTTGH IYK GGI KR I +FEKEAS M KG FKYAW
Sbjct:    1 MGKEKVHISLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEASEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_YARLI (Elongation factor 1-alpha OS=Yarrowia lipolytica GN=TEF PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.063e-20
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTH+N+VVIGHVD+GKSTTTGH IYK GGI KR I +FEKEA  + KG FKYAW
Sbjct:    1 MGKEKTHVNLVVIGHVDAGKSTTTGHLIYKCGGIDKRTIEKFEKEADELGKGSFKYAW 58
The following BLAST results are available for this feature:
BLAST of C21829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
EF1A_ARTSA4.771e-2181.03Elongation factor 1-alpha OS=Artemia salina PE=1 S... [more]
EF1A_APIME4.771e-2181.03Elongation factor 1-alpha OS=Apis mellifera PE=3 S... [more]
EF1A2_HORVU4.771e-2182.76Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]
EF1A2_DROME4.771e-2181.03Elongation factor 1-alpha 2 OS=Drosophila melanoga... [more]
EF1A1_RHIRA4.771e-2177.59Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A1_DROME4.771e-2181.03Elongation factor 1-alpha 1 OS=Drosophila melanoga... [more]
EF1A_YEAST6.232e-2177.59Elongation factor 1-alpha OS=Saccharomyces cerevis... [more]
EF1A_AURPU6.232e-2177.59Elongation factor 1-alpha OS=Aureobasidium pullula... [more]
EF1A_EUGGR8.139e-2179.31Elongation factor 1-alpha OS=Euglena gracilis GN=T... [more]
EF1A_YARLI1.063e-2075.86Elongation factor 1-alpha OS=Yarrowia lipolytica G... [more]

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Properties
Property NameValue
Genbank descriptionC21829 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSJ-37R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21829 ID=C21829; Name=C21829; organism=Citrus sinensis; type=EST; length=259bp
GGCACGAGCCGAAGGGCGNCGAGAGAGAACCATTTTCGCGAATATCATTT
TAATAAGGTTTTTTCTAGATTTNCCTAATGGGTAAGGAGAAGACTCACAT
CAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCG
GACACTNGATCTACAAGCTTGGTGGTATTNANAAGCGTGTTATCGANAGG
TTCGAGAAGGAAGCTTCTNAGATGAACAAGGGGTNATTCAAATACGCCTG
GNTCTCGAN
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