C21829

Overview
NameC21829
Unique NameC21829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_PUCGR (Elongation factor 1-alpha OS=Puccinia graminis GN=TEF PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.063e-20
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 3
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK H+N+VVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ + KG FKYAW
Sbjct:    1 MGKEKNHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAW 58          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_PIRIN (Elongation factor 1-alpha OS=Piriformospora indica GN=TEF1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.063e-20
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 3
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK H+N+VVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ + KG FKYAW
Sbjct:    1 MGKEKAHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAW 58          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.063e-20
Identity = 46/58 (79.31%), Postives = 49/58 (84.48%), Query Frame = 3
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK HINIVVIGHVDSGKST+TGH IYK GGI KR I +FEKEA+ M KG FKYAW
Sbjct:    1 MGKEKIHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAW 58          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.388e-20
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 3
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK H+N+VVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ + KG FKYAW
Sbjct:    1 MGKEKLHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAW 58          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A2_SCHPO (Elongation factor 1-alpha-B/C OS=Schizosaccharomyces pombe GN=tef1b PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.388e-20
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 3
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK HIN+VVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ + KG FKYAW
Sbjct:    1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAW 58          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A1_SCHPO (Elongation factor 1-alpha-A OS=Schizosaccharomyces pombe GN=tef1a PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.388e-20
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 3
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK HIN+VVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ + KG FKYAW
Sbjct:    1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAW 58          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_PORYE (Elongation factor 1-alpha OS=Porphyra yezoensis PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.813e-20
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 3
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK H++IVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ M KG FKYAW
Sbjct:    1 MGKEKQHVSIVVIGHVDSGKSTTTGHLIYKCGGIEKRAIEKFEKEAAEMGKGSFKYAW 58          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1AC_PORPU (Elongation factor 1-alpha C OS=Porphyra purpurea GN=TEF-C PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.813e-20
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 3
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK H++IVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ M KG FKYAW
Sbjct:    1 MGKEKQHVSIVVIGHVDSGKSTTTGHLIYKCGGIDKRAIEKFEKEAAEMGKGSFKYAW 58          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_ENTHI (Elongation factor 1-alpha OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.039e-20
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 3
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            M KEKTHINIVVIGHVDSGKSTTTGH IYK GGI +R I +FEKE++ M KG FKYAW
Sbjct:    1 MPKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDQRTIEKFEKESAEMGKGSFKYAW 58          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_PODCU (Elongation factor 1-alpha OS=Podospora curvicolla GN=TEF PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.275e-20
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 3
Query:   78 MGKE-KTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKE KTHIN+VVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ + KG FKYAW
Sbjct:    1 MGKEDKTHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAW 59          
The following BLAST results are available for this feature:
BLAST of C21829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
EF1A_PUCGR1.063e-2075.86Elongation factor 1-alpha OS=Puccinia graminis GN=... [more]
EF1A_PIRIN1.063e-2075.86Elongation factor 1-alpha OS=Piriformospora indica... [more]
EF1A_ORYLA1.063e-2079.31Elongation factor 1-alpha OS=Oryzias latipes GN=ee... [more]
EF1A_SCHCO1.388e-2075.86Elongation factor 1-alpha OS=Schizophyllum commune... [more]
EF1A2_SCHPO1.388e-2077.59Elongation factor 1-alpha-B/C OS=Schizosaccharomyc... [more]
EF1A1_SCHPO1.388e-2077.59Elongation factor 1-alpha-A OS=Schizosaccharomyces... [more]
EF1A_PORYE1.813e-2077.59Elongation factor 1-alpha OS=Porphyra yezoensis PE... [more]
EF1AC_PORPU1.813e-2077.59Elongation factor 1-alpha C OS=Porphyra purpurea G... [more]
EF1A_ENTHI4.039e-2077.59Elongation factor 1-alpha OS=Entamoeba histolytica... [more]
EF1A_PODCU5.275e-2077.97Elongation factor 1-alpha OS=Podospora curvicolla ... [more]

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Properties
Property NameValue
Genbank descriptionC21829 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSJ-37R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21829 ID=C21829; Name=C21829; organism=Citrus sinensis; type=EST; length=259bp
GGCACGAGCCGAAGGGCGNCGAGAGAGAACCATTTTCGCGAATATCATTT
TAATAAGGTTTTTTCTAGATTTNCCTAATGGGTAAGGAGAAGACTCACAT
CAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCG
GACACTNGATCTACAAGCTTGGTGGTATTNANAAGCGTGTTATCGANAGG
TTCGAGAAGGAAGCTTCTNAGATGAACAAGGGGTNATTCAAATACGCCTG
GNTCTCGAN
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