C21829

Overview
NameC21829
Unique NameC21829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 1.697e-18
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 3
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK H+N+VV+GHVD+GKST TGH IYK GGI KR I +FEKEA+ + K  FKYAW
Sbjct:    1 MGKEKVHMNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAADIGKASFKYAW 58          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.216e-18
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 3
Query:   87 EKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            +K HIN+VVIGHVDSGKSTTTGH IYK GGI KRVI +FEKE++   KG FKYAW
Sbjct:    5 DKVHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRVIEKFEKESAEQGKGSFKYAW 59          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.216e-18
Identity = 43/59 (72.88%), Postives = 46/59 (77.97%), Query Frame = 3
Query:   75 LMGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            +  K K HINIVVIGHVDSGKST+TGH IYK GGI KR I +FEKEA  M KG FKYAW
Sbjct:    1 MSNKVKPHINIVVIGHVDSGKSTSTGHMIYKCGGIDKRQIEKFEKEAQEMGKGSFKYAW 59          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_COCIM (Elongation factor 1-alpha OS=Coccidioides immitis GN=TEF PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.895e-18
Identity = 44/59 (74.58%), Postives = 47/59 (79.66%), Query Frame = 3
Query:   78 MGKE-KTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKE KTHIN+VVIGHVDSGKSTTTGH IYK GGI  R I +FEKEA  + K  FKYAW
Sbjct:    1 MGKEEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDNRTIEKFEKEAEELGKKSFKYAW 59          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_AJECG (Elongation factor 1-alpha OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=TEF PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.895e-18
Identity = 44/59 (74.58%), Postives = 47/59 (79.66%), Query Frame = 3
Query:   78 MGKE-KTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKE KTHIN+VVIGHVDSGKSTTTGH IYK GGI  R I +FEKEA  + K  FKYAW
Sbjct:    1 MGKEDKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDSRTIEKFEKEAEELGKKSFKYAW 59          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_BLAHO (Elongation factor 1-alpha OS=Blastocystis hominis PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.130e-17
Identity = 40/58 (68.97%), Postives = 44/58 (75.86%), Query Frame = 3
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK HIN+VVIGHV +GKSTTTGH IY  GGI KR I RFE+    + KG FKYAW
Sbjct:    1 MGKEKPHINLVVIGHVVAGKSTTTGHLIYACGGIDKRTIERFEEGGQRIGKGSFKYAW 58          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A2_EUPCR (Elongation factor 1-alpha 2 OS=Euplotes crassus GN=EFA2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.883e-16
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            KEK H+N+VVIGHVDSGKSTTTGH IYKLGGI +R + + E++A  +NK  FKYA+
Sbjct:    4 KEKDHLNLVVIGHVDSGKSTTTGHLIYKLGGIDERTLAKLEEKALELNKASFKYAF 59          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A1_XENLA (Elongation factor 1-alpha OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.312e-14
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 3
Query:   87 EKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            +KTH+NIV+IGHVDSGKSTTTGH IYK GG   R + + E  A+ + K  FK+AW
Sbjct:    7 QKTHLNIVIIGHVDSGKSTTTGHLIYKCGGFDPRALEKVEAAAAQLGKSSFKFAW 61          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_SPOFR (Elongation factor 1-alpha (Fragment) OS=Spodoptera frugiperda PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.644e-13
Identity = 34/44 (77.27%), Postives = 35/44 (79.55%), Query Frame = 3
Query:  120 HVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            HVDSGKSTTTGH IYK GGI KR I +FEKEA  M KG FKYAW
Sbjct:    1 HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAW 44          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_HELZE (Elongation factor 1-alpha (Fragment) OS=Heliothis zea PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.644e-13
Identity = 34/44 (77.27%), Postives = 35/44 (79.55%), Query Frame = 3
Query:  120 HVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            HVDSGKSTTTGH IYK GGI KR I +FEKEA  M KG FKYAW
Sbjct:    1 HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAW 44          
The following BLAST results are available for this feature:
BLAST of C21829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
EF1A_TRYBB1.697e-1868.97Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]
EF1A_TETPY2.216e-1874.55Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A_HYDAT2.216e-1872.88Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]
EF1A_COCIM2.895e-1874.58Elongation factor 1-alpha OS=Coccidioides immitis ... [more]
EF1A_AJECG2.895e-1874.58Elongation factor 1-alpha OS=Ajellomyces capsulata... [more]
EF1A_BLAHO7.130e-1768.97Elongation factor 1-alpha OS=Blastocystis hominis ... [more]
EF1A2_EUPCR7.883e-1666.07Elongation factor 1-alpha 2 OS=Euplotes crassus GN... [more]
EF1A1_XENLA3.312e-1460.00Elongation factor 1-alpha OS=Xenopus laevis PE=1 S... [more]
EF1A_SPOFR1.644e-1377.27Elongation factor 1-alpha (Fragment) OS=Spodoptera... [more]
EF1A_HELZE1.644e-1377.27Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]

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Properties
Property NameValue
Genbank descriptionC21829 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSJ-37R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21829 ID=C21829; Name=C21829; organism=Citrus sinensis; type=EST; length=259bp
GGCACGAGCCGAAGGGCGNCGAGAGAGAACCATTTTCGCGAATATCATTT
TAATAAGGTTTTTTCTAGATTTNCCTAATGGGTAAGGAGAAGACTCACAT
CAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCG
GACACTNGATCTACAAGCTTGGTGGTATTNANAAGCGTGTTATCGANAGG
TTCGAGAAGGAAGCTTCTNAGATGAACAAGGGGTNATTCAAATACGCCTG
GNTCTCGAN
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