C21829

Overview
NameC21829
Unique NameC21829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_HELVI (Elongation factor 1-alpha (Fragment) OS=Heliothis virescens PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.644e-13
Identity = 34/44 (77.27%), Postives = 35/44 (79.55%), Query Frame = 3
Query:  120 HVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            HVDSGKSTTTGH IYK GGI KR I +FEKEA  M KG FKYAW
Sbjct:    1 HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAW 44          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_HELGL (Elongation factor 1-alpha (Fragment) OS=Helicoverpa gelotopoeon PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.644e-13
Identity = 34/44 (77.27%), Postives = 35/44 (79.55%), Query Frame = 3
Query:  120 HVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            HVDSGKSTTTGH IYK GGI KR I +FEKEA  M KG FKYAW
Sbjct:    1 HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAW 44          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_HELDI (Elongation factor 1-alpha (Fragment) OS=Heliocheilus discalis PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.644e-13
Identity = 34/44 (77.27%), Postives = 35/44 (79.55%), Query Frame = 3
Query:  120 HVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            HVDSGKSTTTGH IYK GGI KR I +FEKEA  M KG FKYAW
Sbjct:    1 HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAW 44          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_HELAM (Elongation factor 1-alpha (Fragment) OS=Helicoverpa armigera PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.644e-13
Identity = 34/44 (77.27%), Postives = 35/44 (79.55%), Query Frame = 3
Query:  120 HVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            HVDSGKSTTTGH IYK GGI KR I +FEKEA  M KG FKYAW
Sbjct:    1 HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAW 44          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_HELAL (Elongation factor 1-alpha (Fragment) OS=Heliocheilus albipunctella PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.644e-13
Identity = 34/44 (77.27%), Postives = 35/44 (79.55%), Query Frame = 3
Query:  120 HVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            HVDSGKSTTTGH IYK GGI KR I +FEKEA  M KG FKYAW
Sbjct:    1 HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAW 44          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_ANIIF (Elongation factor 1-alpha (Fragment) OS=Anicla infecta PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.644e-13
Identity = 34/44 (77.27%), Postives = 35/44 (79.55%), Query Frame = 3
Query:  120 HVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            HVDSGKSTTTGH IYK GGI KR I +FEKEA  M KG FKYAW
Sbjct:    1 HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAW 44          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_ADIBE (Elongation factor 1-alpha (Fragment) OS=Adisura bella PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.644e-13
Identity = 34/44 (77.27%), Postives = 35/44 (79.55%), Query Frame = 3
Query:  120 HVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            HVDSGKSTTTGH IYK GGI KR I +FEKEA  M KG FKYAW
Sbjct:    1 HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAW 44          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_HYPBU (Elongation factor 1-alpha OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=tuf PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.373e-12
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 3
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            M ++K HIN+VVIGHVD GKST  GH +Y+LG + ++ I   E+EA    K  FKYAW
Sbjct:    1 MSQQKPHINLVVIGHVDHGKSTLVGHLLYRLGFVDEKTIKMLEEEAKKKGKESFKYAW 58          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_IGNH4 (Elongation factor 1-alpha OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=tuf PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.019e-12
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            KEK H+N++VIGHVD GKST  GH +Y+LG + ++ +   E+EA    K  FKYAW
Sbjct:    4 KEKPHMNLIVIGHVDHGKSTLVGHLLYELGFVDEKTLKMLEEEAKKRGKESFKYAW 59          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_DESMO (Elongation factor 1-alpha OS=Desulfurococcus mobilis GN=tuf PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.538e-11
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 3
Query:   87 EKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            +K H+NIV+IGHVD GKST TGH +Y+LG   ++ +   E+E+  M K  FK+AW
Sbjct:    5 QKPHLNIVIIGHVDHGKSTMTGHILYRLGYFDEKTVKMIEEESKKMGKESFKFAW 59          
The following BLAST results are available for this feature:
BLAST of C21829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
EF1A_HELVI1.644e-1377.27Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELGL1.644e-1377.27Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELDI1.644e-1377.27Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_HELAM1.644e-1377.27Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELAL1.644e-1377.27Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_ANIIF1.644e-1377.27Elongation factor 1-alpha (Fragment) OS=Anicla inf... [more]
EF1A_ADIBE1.644e-1377.27Elongation factor 1-alpha (Fragment) OS=Adisura be... [more]
EF1A_HYPBU2.373e-1253.45Elongation factor 1-alpha OS=Hyperthermus butylicu... [more]
EF1A_IGNH49.019e-1251.79Elongation factor 1-alpha OS=Ignicoccus hospitalis... [more]
EF1A_DESMO1.538e-1150.91Elongation factor 1-alpha OS=Desulfurococcus mobil... [more]

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Properties
Property NameValue
Genbank descriptionC21829 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSJ-37R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21829 ID=C21829; Name=C21829; organism=Citrus sinensis; type=EST; length=259bp
GGCACGAGCCGAAGGGCGNCGAGAGAGAACCATTTTCGCGAATATCATTT
TAATAAGGTTTTTTCTAGATTTNCCTAATGGGTAAGGAGAAGACTCACAT
CAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCG
GACACTNGATCTACAAGCTTGGTGGTATTNANAAGCGTGTTATCGANAGG
TTCGAGAAGGAAGCTTCTNAGATGAACAAGGGGTNATTCAAATACGCCTG
GNTCTCGAN
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