C21839

Overview
NameC21839
Unique NameC21839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length363
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1066 contig Csv1_Contig1066:326..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. indica GN=GAPC PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.218e-36
Identity = 69/82 (84.15%), Postives = 76/82 (92.68%), Query Frame = 1
Query:   58 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            MGK+KIGINGFGRIGRLVARV LQ +DVELVAVNDPFITTDYMTYMFKYD+ HGQWKH ++K+KD KTLL GEKPVTVFG+R
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIR 82          

HSP 2 Score: 22.3274 bits (46), Expect = 1.218e-36
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 3
Query:  303 DPEEXHWAXT*AEYVV 350
            +P+E  WA   AEYVV
Sbjct:   83 NPDEIPWAEAGAEYVV 98          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.218e-36
Identity = 70/82 (85.37%), Postives = 75/82 (91.46%), Query Frame = 1
Query:   58 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            M KVKIGINGFGRIGRLVARV L RDDVELVAVNDPFIT DYM YMFKYD+ HGQ+KHHELKVKD+KTLLFG+KPV VFG+R
Sbjct:    1 MAKVKIGINGFGRIGRLVARVALVRDDVELVAVNDPFITVDYMAYMFKYDTVHGQYKHHELKVKDEKTLLFGDKPVAVFGLR 82          

HSP 2 Score: 25.409 bits (54), Expect = 1.218e-36
Identity = 11/16 (68.75%), Postives = 12/16 (75.00%), Query Frame = 3
Query:  303 DPEEXHWAXT*AEYVV 350
            +PEE  WA T AEYVV
Sbjct:   83 NPEEIPWAETGAEYVV 98          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.067e-36
Identity = 70/82 (85.37%), Postives = 76/82 (92.68%), Query Frame = 1
Query:   58 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            M  +KIGINGFGRIGRLVARVILQR+D ELVAVNDPFITT+YMTYMFKYDS HGQWKHH++KVKD+KTLLFGEK VTVFG R
Sbjct:    1 MAPIKIGINGFGRIGRLVARVILQREDCELVAVNDPFITTEYMTYMFKYDSVHGQWKHHDIKVKDEKTLLFGEKAVTVFGNR 82          

HSP 2 Score: 22.7126 bits (47), Expect = 2.067e-36
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 3
Query:  303 DPEEXHWAXT*AEYVV 350
            +PEE  W  T A+YVV
Sbjct:   83 NPEEIPWGGTGADYVV 98          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.693e-36
Identity = 69/82 (84.15%), Postives = 76/82 (92.68%), Query Frame = 1
Query:   58 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            MGK+KIGINGFGRIGRLVARV LQ +DVELVAVNDPFITTDYMTYMFKYD+ HGQWKH ++ +KD KTLLFGEKPVTVFG+R
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIALKDSKTLLFGEKPVTVFGIR 82          

HSP 2 Score: 21.9422 bits (45), Expect = 2.693e-36
Identity = 9/16 (56.25%), Postives = 10/16 (62.50%), Query Frame = 3
Query:  303 DPEEXHWAXT*AEYVV 350
            +PEE  W    AEYVV
Sbjct:   83 NPEEIPWGEAGAEYVV 98          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.232e-35
Identity = 66/81 (81.48%), Postives = 72/81 (88.89%), Query Frame = 1
Query:   61 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            GK+KIGINGFGRIGRLVARV L RDD+ELV VNDPFI+TDYM+YMFKYDS HG+WKHHE+ VKD KTLLFGEK V VFG R
Sbjct:    5 GKIKIGINGFGRIGRLVARVALTRDDIELVGVNDPFISTDYMSYMFKYDSVHGKWKHHEVNVKDSKTLLFGEKSVAVFGCR 85          

HSP 2 Score: 25.409 bits (54), Expect = 2.232e-35
Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 3
Query:  291 FRC*DPEEXHWAXT*AEYVV 350
            F C +PEE  W    AEYVV
Sbjct:   82 FGCRNPEEIPWGEVGAEYVV 101          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 2.232e-35
Identity = 67/82 (81.71%), Postives = 75/82 (91.46%), Query Frame = 1
Query:   58 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            MGK+KIGINGFGRIGRLVARV LQ +DVELVAVNDPFITTDYMTYMFKYD+ HG WKH ++ +KD KTLLFG+KPVTVFG+R
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGHWKHSDITLKDSKTLLFGDKPVTVFGIR 82          

HSP 2 Score: 21.9422 bits (45), Expect = 2.232e-35
Identity = 9/16 (56.25%), Postives = 10/16 (62.50%), Query Frame = 3
Query:  303 DPEEXHWAXT*AEYVV 350
            +PEE  W    AEYVV
Sbjct:   83 NPEEIPWGEAGAEYVV 98          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.346e-35
Identity = 69/81 (85.19%), Postives = 73/81 (90.12%), Query Frame = 1
Query:   61 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            GK+KIGINGFGRIGRLVARV L RDD+ELVAVNDPFI+TDYMTYMFKYDS HGQWK HE+KVKD  TLLFGEK VTVFG R
Sbjct:    5 GKIKIGINGFGRIGRLVARVALLRDDIELVAVNDPFISTDYMTYMFKYDSVHGQWKKHEVKVKDSNTLLFGEKAVTVFGCR 85          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.426e-35
Identity = 69/82 (84.15%), Postives = 74/82 (90.24%), Query Frame = 1
Query:   58 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            M KVK+GINGFGRIGRLVARVILQRDD ELVAVNDPFI+TDYMTYMFKYDS HGQ K HE+K+KD+KTLLFGE PV VFG R
Sbjct:    1 MAKVKVGINGFGRIGRLVARVILQRDDCELVAVNDPFISTDYMTYMFKYDSVHGQCKSHEIKLKDEKTLLFGETPVAVFGCR 82          

HSP 2 Score: 22.7126 bits (47), Expect = 6.426e-35
Identity = 9/20 (45.00%), Postives = 12/20 (60.00%), Query Frame = 3
Query:  291 FRC*DPEEXHWAXT*AEYVV 350
            F C +PEE  W    A++VV
Sbjct:   79 FGCRNPEEIPWGQAGADFVV 98          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.850e-34
Identity = 68/80 (85.00%), Postives = 73/80 (91.25%), Query Frame = 1
Query:   64 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            K+KIGINGFGRIGRLVARV L  DD+ELVAVNDPFITT+YMTYMFKYDS HGQWK  ELKVKD KTLLFG+KP+TVFGVR
Sbjct:    2 KMKIGINGFGRIGRLVARVALMSDDIELVAVNDPFITTEYMTYMFKYDSVHGQWKKDELKVKDSKTLLFGDKPLTVFGVR 81          

HSP 2 Score: 21.9422 bits (45), Expect = 1.850e-34
Identity = 9/16 (56.25%), Postives = 10/16 (62.50%), Query Frame = 3
Query:  303 DPEEXHWAXT*AEYVV 350
            +PEE  W    AEYVV
Sbjct:   82 NPEEDPWGEAGAEYVV 97          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 6.932e-34
Identity = 65/81 (80.25%), Postives = 73/81 (90.12%), Query Frame = 1
Query:   61 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            GK+KIGINGFGRIGRLVARV LQRDD+ELVAVNDPFI+T+ +T +FKYDS HGQWK HE+KVKD+KTLLFGEK V VFG R
Sbjct:    5 GKIKIGINGFGRIGRLVARVALQRDDIELVAVNDPFISTESLTSLFKYDSVHGQWKKHEVKVKDEKTLLFGEKHVAVFGCR 85          

HSP 2 Score: 25.409 bits (54), Expect = 6.932e-34
Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 3
Query:  291 FRC*DPEEXHWAXT*AEYVV 350
            F C +PEE  W    AEYVV
Sbjct:   82 FGCRNPEEIPWGEVGAEYVV 101          
The following BLAST results are available for this feature:
BLAST of C21839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
G3PC_ORYSI1.218e-3684.15Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_CRAPL1.218e-3685.37Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_DIACA2.067e-3685.37Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PD_MAIZE2.693e-3684.15Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PINSY2.232e-3581.48Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAIZE2.232e-3581.71Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_GINBI4.346e-3585.19Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MESCR6.426e-3584.15Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETCR1.850e-3485.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TAXBA6.932e-3480.25Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC21839 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSI-25R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21839 ID=C21839; Name=C21839; organism=Citrus sinensis; type=EST; length=363bp
GGCACGAGCAACTTTNTTCACCACTCTTTCACCGCTCAATTTCATCTCTC
GAGAATCATGGGGAAGGTCAAGATCGGAATCAACGGATTCGGAAGAATTG
GTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACGATGTTGAACTCGTT
GCTGTTAATGATCCCTTTATCACAACCGATTACATGACATACATGTTTAA
GTACGACAGTNTTCACGGTCAATGGAAGCACCATGAATTGAAGGTTAAGG
ACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTT
AGGACCCAGAGGAGTNCCATTGGGCTNAGACTTGAGCCGAGTATGTTGTG
GGTCGACTTGAGC
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