C21839

Overview
NameC21839
Unique NameC21839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length363
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1066 contig Csv1_Contig1066:326..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 2.830e-18
Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 1
Query:   58 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            MGKVK+G+NGFGRIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG++ H  +K ++ K ++ G  P+T+F  R
Sbjct:    1 MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVKAENGKLVING-NPITIFQER 80          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.696e-18
Identity = 41/64 (64.06%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   61 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKD 252
            GK+KIGINGFGRIGRLV R  + R D+E+VA+NDPFI  +YM YMFKYDS H  W  H    KD
Sbjct:    3 GKIKIGINGFGRIGRLVMRATMLRPDIEVVAINDPFIDAEYMAYMFKYDSVHKTWPGHVNGSKD 66          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_PHARH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffia rhodozyma GN=GPD PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.828e-18
Identity = 43/79 (54.43%), Postives = 59/79 (74.68%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            VK+GINGFGRIGR+V R  +   D+++VA+NDPFI  +YM YMFKYDS HG +K   +++KD K ++ G KP+ V+G R
Sbjct:    3 VKVGINGFGRIGRIVLRNAIIHGDIDVVAINDPFIDLEYMVYMFKYDSTHGVFK-GSVEIKDGKLVIEG-KPIVVYGER 79          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.828e-18
Identity = 47/79 (59.49%), Postives = 56/79 (70.89%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            +KIGINGFGRIGRLV RV L R D+E+VAVNDPFI  DY  YMFKYDS HG++K  E+    D  ++ G K + VF  R
Sbjct:    3 IKIGINGFGRIGRLVLRVALGRKDIEVVAVNDPFIAPDYAAYMFKYDSTHGRYK-GEVTASGDDLVIDGHK-IKVFQER 79          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P4_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caenorhabditis elegans GN=gpd-4 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.235e-18
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = 1
Query:   58 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWK 228
            M K  +GINGFGRIGRLV R  +++D V++VAVNDPFIT DYM Y+FKYDS HGQ+K
Sbjct:    1 MSKANVGINGFGRIGRLVLRAAVEKDTVQVVAVNDPFITIDYMVYLFKYDSTHGQFK 57          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.235e-18
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTV 291
            V+I INGFGRIGRLV RV L R ++E+VAVNDPFITTDY  YMFKYDS HG++        DDK ++   K + V
Sbjct:    2 VRIAINGFGRIGRLVLRVALSRSNIEVVAVNDPFITTDYAAYMFKYDSTHGRYAGE--VTHDDKHIIIDGKKIAV 74          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P1_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caenorhabditis elegans GN=gpd-1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.235e-18
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = 1
Query:   58 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWK 228
            M K  +GINGFGRIGRLV R  +++D V++VAVNDPFIT DYM Y+FKYDS HGQ+K
Sbjct:    1 MSKANVGINGFGRIGRLVLRAAVEKDTVQVVAVNDPFITIDYMVYLFKYDSTHGQFK 57          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_SCHCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Schizophyllum commune GN=GPD PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.076e-17
Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVF 294
            VK+GINGFGRIGR+V R  LQ  ++E+VA+NDPFI  DYM YMFKYD+ HG++K   ++VKD K ++ G   +TVF
Sbjct:    3 VKVGINGFGRIGRIVLRNALQLGNIEVVAINDPFIALDYMVYMFKYDTVHGRYK-GTVEVKDGKLVVDGH-AITVF 76          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.604e-17
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = 1
Query:   58 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWK 228
            M K K+GINGFGRIGRLV R  +++D V++VAVNDPFI  DYM YMFKYDS HG++K
Sbjct:    1 MSKPKVGINGFGRIGRLVLRAAVEKDTVDVVAVNDPFINIDYMVYMFKYDSTHGRFK 57          

HSP 2 Score: 21.1718 bits (43), Expect = 1.604e-17
Identity = 9/16 (56.25%), Postives = 9/16 (56.25%), Query Frame = 3
Query:  303 DPEEXHWAXT*AEYVV 350
            DP E  W    AEYVV
Sbjct:   85 DPAEIPWGVDGAEYVV 100          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.396e-17
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            +K+GINGFGRIGR+V R  L+  +VE+VAVNDPFI T+Y  YMFKYDS HG++K  +++ KD   ++ G K + VFG R
Sbjct:    3 IKVGINGFGRIGRIVLRNALKNPEVEVVAVNDPFIDTEYAAYMFKYDSTHGRFK-GKVEAKDGGLIIDG-KHIQVFGER 79          
The following BLAST results are available for this feature:
BLAST of C21839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
G3P_HUMAN2.830e-1852.44Glyceraldehyde-3-phosphate dehydrogenase OS=Homo s... [more]
G3PC_CHLRE3.696e-1864.06Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_PHARH4.828e-1854.43Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffi... [more]
G3P_CANAL4.828e-1859.49Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]
G3P4_CAEEL8.235e-1868.42Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caen... [more]
G3P2_CANGA8.235e-1858.67Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3P1_CAEEL8.235e-1868.42Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caen... [more]
G3P_SCHCO1.076e-1757.89Glyceraldehyde-3-phosphate dehydrogenase OS=Schizo... [more]
G3P_BRUMA1.604e-1768.42Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia... [more]
G3P_YARLI2.396e-1755.70Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]

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Properties
Property NameValue
Genbank descriptionC21839 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSI-25R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21839 ID=C21839; Name=C21839; organism=Citrus sinensis; type=EST; length=363bp
GGCACGAGCAACTTTNTTCACCACTCTTTCACCGCTCAATTTCATCTCTC
GAGAATCATGGGGAAGGTCAAGATCGGAATCAACGGATTCGGAAGAATTG
GTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACGATGTTGAACTCGTT
GCTGTTAATGATCCCTTTATCACAACCGATTACATGACATACATGTTTAA
GTACGACAGTNTTCACGGTCAATGGAAGCACCATGAATTGAAGGTTAAGG
ACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTT
AGGACCCAGAGGAGTNCCATTGGGCTNAGACTTGAGCCGAGTATGTTGTG
GGTCGACTTGAGC
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