C21839

Overview
NameC21839
Unique NameC21839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length363
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1066 contig Csv1_Contig1066:326..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_RHIMI (Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizomucor miehei GN=GPD PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.396e-17
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            VK GINGFGRIGR+V R  L   +VE+VA+NDPFI  +YM YMFKYDS HG++K   ++ KD K ++ G KP++V+  R
Sbjct:    3 VKAGINGFGRIGRIVLRASLLNPEVEVVAINDPFIDLEYMVYMFKYDSTHGRFK-GTVEAKDGKLVVNG-KPISVYAER 79          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P2_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agaricus bisporus GN=gpd2 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.396e-17
Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            VK+GINGFGRIGR+V R  LQ  D+E+VAVNDPFI  +YM YMFKYDS HG++K   ++VK+   ++ G +P+ VF  R
Sbjct:    2 VKVGINGFGRIGRIVLRNALQFQDIEVVAVNDPFIDLEYMAYMFKYDSVHGRFK-GTVEVKNGSFVVDG-RPMKVFAER 78          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P2_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces marxianus GN=GAP2 PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.087e-17
Identity = 44/79 (55.70%), Postives = 54/79 (68.35%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            V+I INGFGRIGRLV R+ L R ++E+VA+NDPFIT DY  YMFKYDS HG++        D K+L+   K V VF  R
Sbjct:    2 VRIAINGFGRIGRLVLRIALSRKNIEVVAINDPFITVDYAAYMFKYDSTHGRFDGE--VSHDGKSLIIDGKKVLVFQER 78          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_SCLSC (Glyceraldehyde-3-phosphate dehydrogenase OS=Sclerotinia sclerotiorum GN=GPD PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.338e-17
Identity = 41/74 (55.41%), Postives = 54/74 (72.97%), Query Frame = 1
Query:   58 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEK 279
            M   K+GINGFGRIGR+V R  ++ DD+++VAVNDPFI T+Y  YM KYDS HGQ+K  ++KV  D   + G+K
Sbjct:    1 MAPTKVGINGFGRIGRIVFRNAIEHDDIDIVAVNDPFIETEYAAYMLKYDSTHGQFK-GDIKVLSDGLEVNGKK 73          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_FELCA (Glyceraldehyde-3-phosphate dehydrogenase OS=Felis catus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 5.338e-17
Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            VK+G+NGFGRIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG++ H  +K ++ K ++ G KP+T+F  R
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KPITIFQER 78          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P3_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluyveromyces marxianus GN=GAP3 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.338e-17
Identity = 44/79 (55.70%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            V+I INGFGRIGRLV R+ L R ++E+VA+NDPFIT DY  YMFKYDS HG++        D K L+   K V VF  R
Sbjct:    2 VRIAINGFGRIGRLVLRIALSRKNIEVVAINDPFITVDYAAYMFKYDSTHGRFDGE--VSHDGKALIIDGKKVLVFQER 78          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.971e-17
Identity = 41/77 (53.25%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   73 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            +GINGFGRIGRLV R+ L RDD+ ++A+NDPFI  DY  YMFKYDS HG++K       + K L+   K + VF  R
Sbjct:    5 VGINGFGRIGRLVLRIALSRDDINVIAINDPFIAPDYAAYMFKYDSTHGKFK--GTVTHEGKYLVINGKKIEVFQER 79          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.971e-17
Identity = 43/77 (55.84%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWK------HHELKVKDDKTLLFGEK 279
            VK+ INGFGRIGRLV R+ LQR  +E+VAVNDPFI+ DY  YMFKYDS HG++K       ++L +   K  +F EK
Sbjct:    2 VKVAINGFGRIGRLVLRIALQRKALEVVAVNDPFISVDYAAYMFKYDSTHGRYKGEVTTSGNDLVIDGHKIAVFQEK 78          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_TRISI (Glyceraldehyde-3-phosphate dehydrogenase OS=Trionyx sinensis GN=GAPDH PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.105e-17
Identity = 42/79 (53.16%), Postives = 57/79 (72.15%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            VKIG+NGFGRIGRLV R     D V++VA+NDPFI  +YM YMFKYDS HG++ H  +K ++ K ++ G+  +T+F  R
Sbjct:    2 VKIGVNGFGRIGRLVTRAAFTCDKVQIVAINDPFIDLNYMVYMFKYDSTHGRF-HGTVKAENGKLVINGQ-AITIFQER 78          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_RAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus GN=Gapdh PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 9.105e-17
Identity = 41/79 (51.90%), Postives = 58/79 (73.42%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            VK+G+NGFGRIGRLV R     D V++VA+NDPFI  +YM YMF+YDS HG++ +  +K ++ K ++ G KP+T+F  R
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFSCDKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-NGTVKAENGKLVING-KPITIFQER 78          
The following BLAST results are available for this feature:
BLAST of C21839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
G3P_RHIMI2.396e-1755.70Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizom... [more]
G3P2_AGABI2.396e-1756.96Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agar... [more]
G3P2_KLUMA4.087e-1755.70Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_SCLSC5.338e-1755.41Glyceraldehyde-3-phosphate dehydrogenase OS=Sclero... [more]
G3P_FELCA5.338e-1751.90Glyceraldehyde-3-phosphate dehydrogenase OS=Felis ... [more]
G3P3_KLUMA5.338e-1755.70Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluy... [more]
G3P_PICAN6.971e-1753.25Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P1_KLULA6.971e-1755.84Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_TRISI9.105e-1753.16Glyceraldehyde-3-phosphate dehydrogenase OS=Triony... [more]
G3P_RAT9.105e-1751.90Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus... [more]

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Properties
Property NameValue
Genbank descriptionC21839 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSI-25R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21839 ID=C21839; Name=C21839; organism=Citrus sinensis; type=EST; length=363bp
GGCACGAGCAACTTTNTTCACCACTCTTTCACCGCTCAATTTCATCTCTC
GAGAATCATGGGGAAGGTCAAGATCGGAATCAACGGATTCGGAAGAATTG
GTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACGATGTTGAACTCGTT
GCTGTTAATGATCCCTTTATCACAACCGATTACATGACATACATGTTTAA
GTACGACAGTNTTCACGGTCAATGGAAGCACCATGAATTGAAGGTTAAGG
ACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTT
AGGACCCAGAGGAGTNCCATTGGGCTNAGACTTGAGCCGAGTATGTTGTG
GGTCGACTTGAGC
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