C21839

Overview
NameC21839
Unique NameC21839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length363
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1066 contig Csv1_Contig1066:326..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_PHACH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phanerochaete chrysosporium GN=GPD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.105e-17
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVF 294
            VK GINGFGRIGR+V R  L   D+++VAVNDPFI  +YM YMFKYDS HG++K   ++ KD K  + G KP+ VF
Sbjct:    3 VKAGINGFGRIGRIVLRNALLHGDIDVVAVNDPFIDLEYMVYMFKYDSVHGRFK-GSVEAKDGKLYVEG-KPIHVF 76          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P1_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Candida glabrata GN=GPD1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.105e-17
Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            V++ INGFGRIGR+V R+ ++RD +++VA+NDPFIT DY  YMFKYDS HG++        DDK L+   K +  +  R
Sbjct:    2 VRVAINGFGRIGRIVLRIAMKRDGIDVVAINDPFITNDYAAYMFKYDSTHGRYDGE--VTHDDKDLIIDGKAIKCYQER 78          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PC_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Gracilaria verrucosa GN=GAPC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.007e-16
Identity = 39/78 (50.00%), Postives = 58/78 (74.36%), Query Frame = 1
Query:   70 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            ++GINGFGRIGRLV R  +++D + +VA+NDPFI  +YM YMFK+DS HG++    ++ KD K ++ G K +T++G R
Sbjct:    5 QVGINGFGRIGRLVLRAAIEKDTMSVVAINDPFIDLEYMAYMFKFDSTHGRYA-GSVETKDGKLIVNG-KSITIYGHR 80          

HSP 2 Score: 21.9422 bits (45), Expect = 1.007e-16
Identity = 9/16 (56.25%), Postives = 10/16 (62.50%), Query Frame = 3
Query:  303 DPEEXHWAXT*AEYVV 350
            DP E  WA   A+YVV
Sbjct:   81 DPAEIPWAEAGADYVV 96          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_PLESA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pleurotus sajor-caju GN=GPD PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.189e-16
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVF 294
            V +GINGFGRIGR+V R  L+   V++VA+NDPFI  DYM YMFKYDS HG++K   ++ KD K ++ G KP+ +F
Sbjct:    2 VNVGINGFGRIGRIVFRNALEVGGVDVVAINDPFIDLDYMVYMFKYDSVHGRFK-GSIEAKDGKLIVEG-KPIHIF 75          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_ZYGRO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosaccharomyces rouxii PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.553e-16
Identity = 42/76 (55.26%), Postives = 54/76 (71.05%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVF 294
            V + +NGFGRIGRLV R+ + R D+ LVA+NDPFI+TDY  YMFKYDS HG++   E+    D  +L G+K V VF
Sbjct:    2 VNVSVNGFGRIGRLVTRIAISRKDINLVAINDPFISTDYAAYMFKYDSTHGRF-DGEVSHDKDHIILNGKK-VAVF 75          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_DANRE (Glyceraldehyde-3-phosphate dehydrogenase OS=Danio rerio GN=gapdh PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.553e-16
Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            VK+GINGFGRIGRLV R       VE+VA+NDPFI  DYM YMF+YDS HG++K  E+K +  K ++ G   +TV+  R
Sbjct:    2 VKVGINGFGRIGRLVTRAAFLTKKVEIVAINDPFIDLDYMVYMFQYDSTHGKYK-GEVKAEGGKLVIDGH-AITVYSER 78          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P1_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces marxianus GN=GAP1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.553e-16
Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVF 294
            V I INGFGRIGRLV R+ L+R ++++VA+NDPFI+ DY  YMFKYDS HG++K       D   L+   K V VF
Sbjct:    2 VSIAINGFGRIGRLVLRIALERKNIDVVAINDPFISVDYAAYMFKYDSTHGKYKGE--VSHDGSNLIINGKKVAVF 75          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.028e-16
Identity = 41/79 (51.90%), Postives = 58/79 (73.42%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            VK+G+NGFGRIGRLV R  +    VE+VA+NDPFI  +YM YMF+YDS HG++ +  +K ++ K ++ G KP+T+F  R
Sbjct:    2 VKVGVNGFGRIGRLVTRAAICSGKVEIVAINDPFIDLNYMVYMFQYDSTHGKF-NGTVKAENGKLVING-KPITIFQER 78          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.028e-16
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            V++ INGFGRIGRLV R+ L R +VE+VA+NDPFI+ DY  YMFKYDS HG++        D+ +L+   K V VF  R
Sbjct:    2 VRVAINGFGRIGRLVLRIALSRPNVEVVAINDPFISVDYAAYMFKYDSTHGRFAGE--VSHDENSLIIDGKKVLVFQER 78          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_LENED (Glyceraldehyde-3-phosphate dehydrogenase OS=Lentinula edodes GN=gpd PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.649e-16
Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFG 297
            VK+GINGFGRIGR+V R  L   +V +VAVNDPFI  +YM YMFKYDS HG++K   ++ K  K ++ G K ++VFG
Sbjct:    3 VKVGINGFGRIGRIVLRNALLNPEVNVVAVNDPFIALEYMVYMFKYDSVHGRFK-GTVETKGGKLIVDG-KEISVFG 77          
The following BLAST results are available for this feature:
BLAST of C21839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
G3P_PHACH9.105e-1757.89Glyceraldehyde-3-phosphate dehydrogenase OS=Phaner... [more]
G3P1_CANGA9.105e-1749.37Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Cand... [more]
G3PC_GRAVE1.007e-1650.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_PLESA1.189e-1655.26Glyceraldehyde-3-phosphate dehydrogenase OS=Pleuro... [more]
G3P_ZYGRO1.553e-1655.26Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosa... [more]
G3P_DANRE1.553e-1654.43Glyceraldehyde-3-phosphate dehydrogenase OS=Danio ... [more]
G3P1_KLUMA1.553e-1653.95Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_MOUSE2.028e-1651.90Glyceraldehyde-3-phosphate dehydrogenase OS=Mus mu... [more]
G3P2_KLULA2.028e-1653.16Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_LENED2.649e-1655.84Glyceraldehyde-3-phosphate dehydrogenase OS=Lentin... [more]

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Properties
Property NameValue
Genbank descriptionC21839 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSI-25R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21839 ID=C21839; Name=C21839; organism=Citrus sinensis; type=EST; length=363bp
GGCACGAGCAACTTTNTTCACCACTCTTTCACCGCTCAATTTCATCTCTC
GAGAATCATGGGGAAGGTCAAGATCGGAATCAACGGATTCGGAAGAATTG
GTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACGATGTTGAACTCGTT
GCTGTTAATGATCCCTTTATCACAACCGATTACATGACATACATGTTTAA
GTACGACAGTNTTCACGGTCAATGGAAGCACCATGAATTGAAGGTTAAGG
ACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTT
AGGACCCAGAGGAGTNCCATTGGGCTNAGACTTGAGCCGAGTATGTTGTG
GGTCGACTTGAGC
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