C21839

Overview
NameC21839
Unique NameC21839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length363
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1066 contig Csv1_Contig1066:326..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_XENLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopus laevis GN=gapdh PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.708e-16
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVRTQRS 315
            VK+GINGFG IGRLV R       V++VA+NDPFI  DYM YMFKYDS HG++K   +K ++ K L+  ++ +TVF  R   S
Sbjct:    2 VKVGINGFGCIGRLVTRAAFDSGKVQVVAINDPFIDLDYMVYMFKYDSTHGRFK-GTVKAENGK-LIINDQVITVFQERDPSS 82          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_PIG (Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4)

HSP 1 Score: 82.4185 bits (202), Expect = 7.708e-16
Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            VK+G+NGFGRIGRLV R       V++VA+NDPFI   YM YMF+YDS HG++ H  +K ++ K ++ G K +T+F  R
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KAITIFQER 78          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.708e-16
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            VK+G+NGFGRIGRLV R       VE+VA+NDPFI  +YM YMF+YDS HG++K   +K ++ K ++ G K +T+F  R
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFTSGKVEVVAINDPFIDLNYMVYMFQYDSTHGKFK-GTVKAENGKLVING-KAITIFQER 78          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PC_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chondrus crispus GN=GAPC PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 8.205e-16
Identity = 40/78 (51.28%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   70 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            K+GINGFGRIGRLV R  +++   ++VA+NDPFI  DYM YM KYDS HG++   ++ +KD K  + G   +TVF  R
Sbjct:    5 KVGINGFGRIGRLVLRAAIEKGTCQVVAINDPFIDLDYMAYMLKYDSTHGRYA-GDVSIKDGKLQVDGNS-ITVFAHR 80          

HSP 2 Score: 21.557 bits (44), Expect = 8.205e-16
Identity = 8/16 (50.00%), Postives = 10/16 (62.50%), Query Frame = 3
Query:  303 DPEEXHWAXT*AEYVV 350
            DP E  WA   A+Y+V
Sbjct:   81 DPAEIPWATAAADYIV 96          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_RABIT (Glyceraldehyde-3-phosphate dehydrogenase OS=Oryctolagus cuniculus GN=GAPDH PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.007e-15
Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            VK+G+NGFGRIGRLV R       V++VA+NDPFI   YM YMF+YDS HG++ H  +K ++ K ++ G K +T+F  R
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDVVAINDPFIDLHYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KAITIFQER 78          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P2_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhizomucor racemosus GN=GPD2 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.007e-15
Identity = 40/78 (51.28%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   70 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            ++GINGFGRIGR+V R  L   +V++VA+NDPFI  +YM YMFKYDS HG+++   ++ KD K ++ G K ++VF  R
Sbjct:    4 QVGINGFGRIGRIVLRASLSNPEVQVVAINDPFIPLEYMVYMFKYDSVHGRFQ-GTVEAKDGKLVVNG-KEISVFSER 79          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_SPECI (Glyceraldehyde-3-phosphate dehydrogenase OS=Spermophilus citellus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 1.315e-15
Identity = 39/79 (49.37%), Postives = 56/79 (70.89%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            VK+G+NGFGRIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG++ H  +K ++ K ++ G K +++F  R
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KSISIFQER 78          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.315e-15
Identity = 36/71 (50.70%), Postives = 53/71 (74.65%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEK 279
            + +GINGFGRIGRLV R+ L R D+++VA+NDPFI  +Y +YMFKYDS HG++   E+  + +  ++ G+K
Sbjct:    3 ITVGINGFGRIGRLVLRIALSRKDIQIVAINDPFIAPEYASYMFKYDSTHGRYS-GEVSHEGENIVIDGKK 72          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_PANVR (Glyceraldehyde-3-phosphate dehydrogenase OS=Panulirus versicolor PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.315e-15
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 1
Query:   70 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVF 294
            KIGINGFGRIGRLV R  L+    ++VAVNDPFI  +YM YMFKYDS HG +K  E+K +D   ++ G+K +TVF
Sbjct:    2 KIGINGFGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFK-GEVKAEDGALVVDGKK-ITVF 73          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_MUSPF (Glyceraldehyde-3-phosphate dehydrogenase OS=Mustela putorius furo GN=GAPDH PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.315e-15
Identity = 39/79 (49.37%), Postives = 56/79 (70.89%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            VK+G+NGFGRIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG++ H  +K ++ K ++ G K +++F  R
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KSISIFQER 78          
The following BLAST results are available for this feature:
BLAST of C21839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
G3P_XENLA7.708e-1651.81Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopu... [more]
G3P_PIG7.708e-1650.63Glyceraldehyde-3-phosphate dehydrogenase OS=Sus sc... [more]
G3P_CRIGR7.708e-1651.90Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]
G3PC_CHOCR8.205e-1651.28Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_RABIT1.007e-1550.63Glyceraldehyde-3-phosphate dehydrogenase OS=Orycto... [more]
G3P2_RHIRA1.007e-1551.28Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhiz... [more]
G3P_SPECI1.315e-1549.37Glyceraldehyde-3-phosphate dehydrogenase OS=Spermo... [more]
G3P_PICCI1.315e-1550.70Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_PANVR1.315e-1558.67Glyceraldehyde-3-phosphate dehydrogenase OS=Panuli... [more]
G3P_MUSPF1.315e-1549.37Glyceraldehyde-3-phosphate dehydrogenase OS=Mustel... [more]

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Properties
Property NameValue
Genbank descriptionC21839 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSI-25R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21839 ID=C21839; Name=C21839; organism=Citrus sinensis; type=EST; length=363bp
GGCACGAGCAACTTTNTTCACCACTCTTTCACCGCTCAATTTCATCTCTC
GAGAATCATGGGGAAGGTCAAGATCGGAATCAACGGATTCGGAAGAATTG
GTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACGATGTTGAACTCGTT
GCTGTTAATGATCCCTTTATCACAACCGATTACATGACATACATGTTTAA
GTACGACAGTNTTCACGGTCAATGGAAGCACCATGAATTGAAGGTTAAGG
ACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTT
AGGACCCAGAGGAGTNCCATTGGGCTNAGACTTGAGCCGAGTATGTTGTG
GGTCGACTTGAGC
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