C21839

Overview
NameC21839
Unique NameC21839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length363
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1066 contig Csv1_Contig1066:326..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_COLLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Columba livia GN=GAPDH PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 3.043e-15
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            VK+G+NGFGRIGRLV R  +    V++VA+NDPFI  +YM YMFKYDS HG ++   +K ++ K ++ G   +T+F  R
Sbjct:    2 VKVGVNGFGRIGRLVTRAAILSAKVQVVAINDPFIDLNYMVYMFKYDSTHGHFR-GTVKAENGKLVING-NAITIFQER 78          

HSP 2 Score: 21.9422 bits (45), Expect = 3.043e-15
Identity = 9/16 (56.25%), Postives = 9/16 (56.25%), Query Frame = 3
Query:  303 DPEEXHWAXT*AEYVV 350
            DP    WA   AEYVV
Sbjct:   79 DPSNIKWADAGAEYVV 94          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.825e-15
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGE 276
            VK+GINGFGRIGR+V R  ++ +DVE+VAVNDPFI   Y  YM KYDS HGQ+K  ++KV  +   + G+
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSTHGQFK-GDIKVDGNNLTVNGK 71          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P1_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agaricus bisporus GN=gpd1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.825e-15
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEK 279
            V +GINGFGRIGRLV R  LQ   + +VAVNDPF+  +YM Y+FKYDS HG+++  +++ KD K ++ G K
Sbjct:    2 VNVGINGFGRIGRLVLRNALQMQILTVVAVNDPFLDVEYMAYLFKYDSVHGRYQ-GKVETKDGKLIIDGHK 71          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_HOMAM (Glyceraldehyde-3-phosphate dehydrogenase OS=Homarus americanus PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.996e-15
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 1
Query:   70 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVF 294
            KIGINGFGRIGRLV R  L     ++VAVNDPFI  +YM YMFKYDS HG +K  E+K++D   ++ G+K +TVF
Sbjct:    2 KIGINGFGRIGRLVLRAALSCG-AQVVAVNDPFIALEYMVYMFKYDSTHGVFK-GEVKMEDGALVVDGKK-ITVF 73          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Bos taurus GN=GAPDH PE=1 SV=4)

HSP 1 Score: 79.7221 bits (195), Expect = 4.996e-15
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            VK+G+NGFGRIGRLV R       V++VA+NDPFI   YM YMF+YDS HG++ +  +K ++ K ++ G K +T+F  R
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF-NGTVKAENGKLVING-KAITIFQER 78          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P1_JACOR (Glyceraldehyde-3-phosphate dehydrogenase, muscle OS=Jaculus orientalis PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.996e-15
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKD 252
            VK+G+NGFGRIGRLV R       V++VA+NDPFI  +YM YMFKYDS HG++K   + + D
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFKYDSTHGKFKVDIVAIND 63          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PT_DANRE (Glyceraldehyde 3-phosphate dehydrogenase, testis-specific OS=Danio rerio GN=gapdhs PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.137e-15
Identity = 40/79 (50.63%), Postives = 58/79 (73.42%), Query Frame = 1
Query:   58 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVF 294
            M ++ +GINGFGRIGRLV R  LQ+  +++ A+NDPFI   YM YMFKYDS HG++K  E+ ++D K ++ G+  ++VF
Sbjct:    1 MSELCVGINGFGRIGRLVLRACLQKG-IKVTAINDPFIDLQYMVYMFKYDSTHGRYK-GEVHMEDGKLIVDGQ-AISVF 76          

HSP 2 Score: 21.557 bits (44), Expect = 5.137e-15
Identity = 10/25 (40.00%), Postives = 12/25 (48.00%), Query Frame = 3
Query:  276 EACHCFRC*DPEEXHWAXT*AEYVV 350
            +A   F+C  P E  W    A YVV
Sbjct:   71 QAISVFQCMKPAEIPWGDAGALYVV 95          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.522e-15
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGE 276
            VK+GINGFGRIGR+V R  ++ +DV++VAVNDPFI   Y  YM KYDS HGQ+K  ++KV  +   + G+
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHNDVDIVAVNDPFIEPHYAAYMLKYDSTHGQFK-GDIKVDGNNLTVNGK 71          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.127e-14
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWK 228
            VK+GINGFGRIGR+V R  ++  +VE+VAVNDPFI T Y  YM KYDS HG++K
Sbjct:    3 VKVGINGFGRIGRIVFRNAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFK 56          

HSP 2 Score: 21.557 bits (44), Expect = 1.127e-14
Identity = 8/16 (50.00%), Postives = 10/16 (62.50%), Query Frame = 3
Query:  303 DPEEXHWAXT*AEYVV 350
            DP    WA T A+YV+
Sbjct:   80 DPANIPWAETGADYVI 95          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.127e-14
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWK 228
            VK+GINGFGRIGR+V R  ++  +VE+VAVNDPFI T Y  YM KYDS HG++K
Sbjct:    3 VKVGINGFGRIGRIVFRNAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFK 56          

HSP 2 Score: 21.557 bits (44), Expect = 1.127e-14
Identity = 8/16 (50.00%), Postives = 10/16 (62.50%), Query Frame = 3
Query:  303 DPEEXHWAXT*AEYVV 350
            DP    WA T A+YV+
Sbjct:   80 DPANIPWAETGADYVI 95          
The following BLAST results are available for this feature:
BLAST of C21839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
G3P_COLLI3.043e-1549.37Glyceraldehyde-3-phosphate dehydrogenase OS=Columb... [more]
G3P_CURLU3.825e-1555.71Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P1_AGABI3.825e-1553.52Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agar... [more]
G3P_HOMAM4.996e-1558.67Glyceraldehyde-3-phosphate dehydrogenase OS=Homaru... [more]
G3P_BOVIN4.996e-1549.37Glyceraldehyde-3-phosphate dehydrogenase OS=Bos ta... [more]
G3P1_JACOR4.996e-1556.45Glyceraldehyde-3-phosphate dehydrogenase, muscle O... [more]
G3PT_DANRE5.137e-1550.63Glyceraldehyde 3-phosphate dehydrogenase, testis-s... [more]
G3P_COCHE8.522e-1554.29Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]
G3P_COCP71.127e-1464.81Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P_COCIM1.127e-1464.81Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]

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Properties
Property NameValue
Genbank descriptionC21839 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSI-25R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21839 ID=C21839; Name=C21839; organism=Citrus sinensis; type=EST; length=363bp
GGCACGAGCAACTTTNTTCACCACTCTTTCACCGCTCAATTTCATCTCTC
GAGAATCATGGGGAAGGTCAAGATCGGAATCAACGGATTCGGAAGAATTG
GTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACGATGTTGAACTCGTT
GCTGTTAATGATCCCTTTATCACAACCGATTACATGACATACATGTTTAA
GTACGACAGTNTTCACGGTCAATGGAAGCACCATGAATTGAAGGTTAAGG
ACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTT
AGGACCCAGAGGAGTNCCATTGGGCTNAGACTTGAGCCGAGTATGTTGTG
GGTCGACTTGAGC
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