C21840

Overview
NameC21840
Unique NameC21840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length261
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4907 contig Csv1_Contig4907:644..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH2_HORVU (Alcohol dehydrogenase 2 OS=Hordeum vulgare GN=ADH2 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.053e-28
Identity = 58/85 (68.24%), Postives = 69/85 (81.18%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            +MISAF C HDGWGVA      +K+  FKTHPMN LNERTL+GTFFGNYKPR+ LP VV+ YM KELE++KFITH++PFS+IN A
Sbjct:  277 AMISAFECVHDGWGVA------HKEAVFKTHPMNFLNERTLRGTFFGNYKPRTGLPGVVDMYMRKELELDKFITHSLPFSQINTA 355          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADHL6_ARATH (Alcohol dehydrogenase-like 6 OS=Arabidopsis thaliana GN=At5g24760 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.875e-18
Identity = 40/82 (48.78%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   16 SAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            +A     DGWG+ V +GVP        H    L+ ++LKGT FG +KP+SDLPS+++KYMNKE+ +++FITH + F EINKA
Sbjct:  282 TALQSCSDGWGMTVTLGVPKAKPEVSAHYGLFLSGKSLKGTLFGGWKPKSDLPSLIDKYMNKEIMIDEFITHNLSFDEINKA 363          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADHX_ORYSJ (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. japonica GN=Os02g0815500 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.366e-18
Identity = 39/84 (46.43%), Postives = 56/84 (66.67%), Query Frame = 1
Query:   10 MISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            M SA  C H GWG +V+VGV        T P  L+  R  KGT FG +K RS +P +VEKY+NKE++V++++TH++  ++INKA
Sbjct:  280 MRSALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSMNLTDINKA 363          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADHX_ORYSI (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.366e-18
Identity = 39/84 (46.43%), Postives = 56/84 (66.67%), Query Frame = 1
Query:   10 MISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            M SA  C H GWG +V+VGV        T P  L+  R  KGT FG +K RS +P +VEKY+NKE++V++++TH++  ++INKA
Sbjct:  280 MRSALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSMNLTDINKA 363          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADHX_ARATH (Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.366e-18
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 1
Query:   10 MISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            M +A  C H GWG +V+VGV        T P  L+  R  KGT FG +K R+ +P +VEKYMNKE++V+++ITH +   EINKA
Sbjct:  278 MRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKA 361          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADHX_PEA (Alcohol dehydrogenase class-3 OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.179e-17
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 1
Query:   10 MISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            M SA  C H GWG +V+VGV        T P  L+  R  KGT FG +K RS +P +VEKY+ KE++V+++ITH +   EINKA
Sbjct:  277 MRSALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLKKEIKVDEYITHNLTLLEINKA 360          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADHX_UROHA (Alcohol dehydrogenase class-3 OS=Uromastyx hardwickii PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.578e-16
Identity = 37/84 (44.05%), Postives = 56/84 (66.67%), Query Frame = 1
Query:   10 MISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            M +A    H GWGV+V+VGV        T P  L+  RT KGT FG +K    +P +V++YM+K+++V++F+THT+PF +IN+A
Sbjct:  274 MRAALEACHKGWGVSVIVGVAAAGQEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVDEYMSKKMKVDEFVTHTLPFEQINEA 357          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADHX_DICDI (Alcohol dehydrogenase class-3 OS=Dictyostelium discoideum GN=adh5 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.578e-16
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 1
Query:   10 MISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            M +A  C H GWGV+ +VGV        T P  L+  R  KG+ FG  K RS LPS+++KYM+K+L+V++++T T P +EIN A
Sbjct:  280 MRAALECCHKGWGVSTIVGVAPAGAEISTRPFQLVTGRVWKGSAFGGVKSRSQLPSIIDKYMDKKLKVDEYVTFTYPLNEINTA 363          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADHL_GADMO (Alcohol dehydrogenase class-3 chain L OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.691e-16
Identity = 36/83 (43.37%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   10 MISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINK 258
            M +A    H GWG +V++GV        T P  L+  RT KGT FG YK    +P +VE+YMNK+++V++F+THT+PF +I++
Sbjct:  276 MRAALEACHKGWGTSVIIGVAAAGQEISTRPFQLVTGRTWKGTAFGGYKSVESVPKLVEEYMNKKVKVDEFVTHTLPFEKIHE 358          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADHX_BOVIN (Alcohol dehydrogenase class-3 OS=Bos taurus GN=ADH5 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.995e-16
Identity = 35/84 (41.67%), Postives = 56/84 (66.67%), Query Frame = 1
Query:   10 MISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            M +A    H GWG++V+VGV    +   T P  L+  RT KGT FG +K    +P +V +YM+K+++V++F+TH++PF +IN+A
Sbjct:  275 MRAALEACHKGWGISVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHSLPFDQINEA 358          
The following BLAST results are available for this feature:
BLAST of C21840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
ADH2_HORVU1.053e-2868.24Alcohol dehydrogenase 2 OS=Hordeum vulgare GN=ADH2... [more]
ADHL6_ARATH2.875e-1848.78Alcohol dehydrogenase-like 6 OS=Arabidopsis thalia... [more]
ADHX_ORYSJ8.366e-1846.43Alcohol dehydrogenase class-3 OS=Oryza sativa subs... [more]
ADHX_ORYSI8.366e-1846.43Alcohol dehydrogenase class-3 OS=Oryza sativa subs... [more]
ADHX_ARATH8.366e-1847.62Alcohol dehydrogenase class-3 OS=Arabidopsis thali... [more]
ADHX_PEA3.179e-1747.62Alcohol dehydrogenase class-3 OS=Pisum sativum PE=... [more]
ADHX_UROHA1.578e-1644.05Alcohol dehydrogenase class-3 OS=Uromastyx hardwic... [more]
ADHX_DICDI1.578e-1645.24Alcohol dehydrogenase class-3 OS=Dictyostelium dis... [more]
ADHL_GADMO2.691e-1643.37Alcohol dehydrogenase class-3 chain L OS=Gadus mor... [more]
ADHX_BOVIN5.995e-1641.67Alcohol dehydrogenase class-3 OS=Bos taurus GN=ADH... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21840 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSG-21R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21840 ID=C21840; Name=C21840; organism=Citrus sinensis; type=EST; length=261bp
GGCACGAGCATGATTTCAGCATTTNANTGCNTTCACGATGGTTGGGGTGT
TGCTGTGCTTGTGGGTGTGCCAAACAAAGATGATGCATTCAAGACTCATC
CCATGAATCTCCTTAATGAGAGGACTCTTAAGGGTACCTTCTTTGGCAAC
TACAAACCTCGCTCTGATCTTCCTTCTGTTGTTGAAAAATACATGAACAA
GGAGTTGGAGGTCGAGAAATTCATCACTCACACTGTGCCCTTCTCGGAGA
TAAACAAGGCA
back to top