C21840

Overview
NameC21840
Unique NameC21840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length261
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4907 contig Csv1_Contig4907:644..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1_GEOKN (Alcohol dehydrogenase 1 OS=Geomys knoxjonesi GN=ADH1 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 4.750e-13
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINK 258
            +M+SA  C  +  GV+V+VGVP    +    PM LL+ R+ KG  FG YK + D+P +V  +M K+  +E  IT+  PF++IN+
Sbjct:  275 TMVSALMCCQESHGVSVIVGVPPNAQSLTMDPMVLLSGRSWKGAVFGGYKGKDDVPKLVADFMAKKFPLEPLITNVFPFAKINE 358          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1_GEOBU (Alcohol dehydrogenase 1 OS=Geomys bursarius GN=ADH1 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 4.750e-13
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINK 258
            +M+SA  C  +  GV+V+VGVP    +    PM LL+ R+ KG  FG YK + D+P +V  +M K+  +E  IT+  PF++IN+
Sbjct:  275 TMVSALMCCQESHGVSVIVGVPPNAQSLTMDPMVLLSGRSWKGAVFGGYKGKDDVPKLVADFMAKKFPLEPLITNVFPFAKINE 358          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADHX_CAEEL (Alcohol dehydrogenase class-3 OS=Caenorhabditis elegans GN=H24K24.3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.204e-13
Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            +M  A    H GWGV+ ++GV        T P  L+  RT KGT FG +K    +P +V+ YMNK+L +++FITH     +IN A
Sbjct:  281 TMRQALEAAHKGWGVSCIIGVAGAGQEIATRPFQLVTGRTWKGTAFGGWKSVESVPRLVDDYMNKKLLIDEFITHRWNIDDINTA 365          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1_ANAPL (Alcohol dehydrogenase 1 (Fragment) OS=Anas platyrhynchos GN=ADH1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.204e-13
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINK 258
            +M++A    H  +GV+V+VGVP         PM L + RT KG+ FG +K +  +P +V  YM K+  ++  ITHT+PFS+IN+
Sbjct:   85 TMVAALASCHYNYGVSVIVGVPPAAQNITFDPMLLFSGRTWKGSVFGGWKSKDSVPKLVADYMKKKFVLDPLITHTLPFSKINE 168          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: FRMA_SHISS (S-(hydroxymethyl)glutathione dehydrogenase OS=Shigella sonnei (strain Ss046) GN=frmA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.103e-13
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 1
Query:   10 MISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            M +A    H GWG +V++GV        T P  L+  R  KG+ FG  K RS LP +VE  M  ++++E F+THT+   EIN A
Sbjct:  270 MRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDA 353          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: FRMA_ECOUT (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.103e-13
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 1
Query:   10 MISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            M +A    H GWG +V++GV        T P  L+  R  KG+ FG  K RS LP +VE  M  ++++E F+THT+   EIN A
Sbjct:  270 MRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDA 353          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: FRMA_ECOSM (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.103e-13
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 1
Query:   10 MISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            M +A    H GWG +V++GV        T P  L+  R  KG+ FG  K RS LP +VE  M  ++++E F+THT+   EIN A
Sbjct:  270 MRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDA 353          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: FRMA_ECOLC (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=frmA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.103e-13
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 1
Query:   10 MISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            M +A    H GWG +V++GV        T P  L+  R  KG+ FG  K RS LP +VE  M  ++++E F+THT+   EIN A
Sbjct:  270 MRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDA 353          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL6 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6 GN=frmA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.103e-13
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 1
Query:   10 MISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            M +A    H GWG +V++GV        T P  L+  R  KG+ FG  K RS LP +VE  M  ++++E F+THT+   EIN A
Sbjct:  270 MRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDA 353          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL5 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.103e-13
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 1
Query:   10 MISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            M +A    H GWG +V++GV        T P  L+  R  KG+ FG  K RS LP +VE  M  ++++E F+THT+   EIN A
Sbjct:  270 MRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDA 353          
The following BLAST results are available for this feature:
BLAST of C21840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
ADH1_GEOKN4.750e-1340.48Alcohol dehydrogenase 1 OS=Geomys knoxjonesi GN=AD... [more]
ADH1_GEOBU4.750e-1340.48Alcohol dehydrogenase 1 OS=Geomys bursarius GN=ADH... [more]
ADHX_CAEEL6.204e-1340.00Alcohol dehydrogenase class-3 OS=Caenorhabditis el... [more]
ADH1_ANAPL6.204e-1340.48Alcohol dehydrogenase 1 (Fragment) OS=Anas platyrh... [more]
FRMA_SHISS8.103e-1340.48S-(hydroxymethyl)glutathione dehydrogenase OS=Shig... [more]
FRMA_ECOUT8.103e-1340.48S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOSM8.103e-1340.48S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOLC8.103e-1340.48S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOL68.103e-1340.48S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOL58.103e-1340.48S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionC21840 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSG-21R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21840 ID=C21840; Name=C21840; organism=Citrus sinensis; type=EST; length=261bp
GGCACGAGCATGATTTCAGCATTTNANTGCNTTCACGATGGTTGGGGTGT
TGCTGTGCTTGTGGGTGTGCCAAACAAAGATGATGCATTCAAGACTCATC
CCATGAATCTCCTTAATGAGAGGACTCTTAAGGGTACCTTCTTTGGCAAC
TACAAACCTCGCTCTGATCTTCCTTCTGTTGTTGAAAAATACATGAACAA
GGAGTTGGAGGTCGAGAAATTCATCACTCACACTGTGCCCTTCTCGGAGA
TAAACAAGGCA
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