C21840

Overview
NameC21840
Unique NameC21840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length261
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4907 contig Csv1_Contig4907:644..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: FRMA_ECOK1 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=frmA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.103e-13
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 1
Query:   10 MISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            M +A    H GWG +V++GV        T P  L+  R  KG+ FG  K RS LP +VE  M  ++++E F+THT+   EIN A
Sbjct:  270 MRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDA 353          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: FRMA_ECOHS (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=frmA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.103e-13
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 1
Query:   10 MISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            M +A    H GWG +V++GV        T P  L+  R  KG+ FG  K RS LP +VE  M  ++++E F+THT+   EIN A
Sbjct:  270 MRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDA 353          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: FRMA_ECO57 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O157:H7 GN=frmA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.103e-13
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 1
Query:   10 MISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            M +A    H GWG +V++GV        T P  L+  R  KG+ FG  K RS LP +VE  M  ++++E F+THT+   EIN A
Sbjct:  270 MRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDA 353          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: FRMA_ECO24 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.103e-13
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 1
Query:   10 MISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            M +A    H GWG +V++GV        T P  L+  R  KG+ FG  K RS LP +VE  M  ++++E F+THT+   EIN A
Sbjct:  270 MRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDA 353          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADHX_MYXGL (Alcohol dehydrogenase class-3 OS=Myxine glutinosa PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.103e-13
Identity = 32/84 (38.10%), Postives = 50/84 (59.52%), Query Frame = 1
Query:   10 MISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            M +A    H GWGV+V++GV        T P  L+  RT KG  FG +K    +P +V+ YM  ++ V++F++H++PF  IN+A
Sbjct:  277 MRAALESCHKGWGVSVILGVAGGGQEISTRPFQLVTGRTWKGAAFGGWKSVESVPKLVDDYMAGKIMVDEFVSHSLPFDSINEA 360          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: FADH_YEAST (S-(hydroxymethyl)glutathione dehydrogenase OS=Saccharomyces cerevisiae GN=SFA1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.058e-12
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   10 MISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            M  A    H GWG ++++GV    +   T P  L+  R  KG+ FG  K RS++  +++ Y    L+VE+FITH  PF EIN+A
Sbjct:  283 MRDALEACHKGWGQSIIIGVAAAGEEISTRPFQLVTGRVWKGSAFGGIKGRSEMGGLIKDYQKGALKVEEFITHRRPFKEINQA 366          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1B_PAPHA (Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH1B PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.058e-12
Identity = 31/84 (36.90%), Postives = 50/84 (59.52%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINK 258
            +M+++  C H+  G +V+VGVP        +PM LL  RT KG  +G +K R  +P +V  +M K+  ++  ITH +PF +IN+
Sbjct:  275 TMMASLLCCHEACGTSVIVGVPPDSQNLSINPMLLLTGRTWKGAVYGGFKSREGIPKLVADFMAKKFSLDALITHVLPFEKINE 358          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1_PERMA (Alcohol dehydrogenase 1 OS=Peromyscus maniculatus GN=ADH1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.382e-12
Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            +M S+    H   GV+V+VGVP    +   +PM+LL  R+ KG  FG +K +  +P +V  +M K+  +E  ITH +PF +IN+A
Sbjct:  275 TMTSSLLSCHASCGVSVIVGVPPNAQSLSVNPMSLLMGRSWKGAIFGGFKSKDSVPKLVTDFMAKKFPLEPLITHVLPFEKINEA 359          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: FRMA_PASPI (S-(hydroxymethyl)glutathione dehydrogenase OS=Pasteurella piscicida GN=frmA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.805e-12
Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   10 MISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            M SA    H GWG +V++GV        T P  L+  R  KGT FG  K R+ LP +VE  M+ ++E+  F+THT+   +IN+A
Sbjct:  270 MRSALESAHRGWGQSVIIGVAGAGKEISTRPFQLVTGRVWKGTAFGGVKGRTQLPGMVEDAMSGKIELAPFVTHTMELDKINEA 353          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADHL3_ARATH (Alcohol dehydrogenase-like 3 OS=Arabidopsis thaliana GN=At1g32780 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.805e-12
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   19 AFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            AF   H GWG  VLVG+         HPM L + R + G+ FG +KP+S LP+  ++ M   +++E FIT+ +PF +IN A
Sbjct:  292 AFLSTHVGWGSTVLVGIYPTPRTLPLHPMELFDGRRITGSVFGGFKPKSQLPNFAQQCMKGVVKLEPFITNELPFEKINDA 372          
The following BLAST results are available for this feature:
BLAST of C21840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
FRMA_ECOK18.103e-1340.48S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOHS8.103e-1340.48S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO578.103e-1340.48S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO248.103e-1340.48S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
ADHX_MYXGL8.103e-1338.10Alcohol dehydrogenase class-3 OS=Myxine glutinosa ... [more]
FADH_YEAST1.058e-1239.29S-(hydroxymethyl)glutathione dehydrogenase OS=Sacc... [more]
ADH1B_PAPHA1.058e-1236.90Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH... [more]
ADH1_PERMA1.382e-1238.82Alcohol dehydrogenase 1 OS=Peromyscus maniculatus ... [more]
FRMA_PASPI1.805e-1240.48S-(hydroxymethyl)glutathione dehydrogenase OS=Past... [more]
ADHL3_ARATH1.805e-1240.74Alcohol dehydrogenase-like 3 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC21840 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSG-21R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21840 ID=C21840; Name=C21840; organism=Citrus sinensis; type=EST; length=261bp
GGCACGAGCATGATTTCAGCATTTNANTGCNTTCACGATGGTTGGGGTGT
TGCTGTGCTTGTGGGTGTGCCAAACAAAGATGATGCATTCAAGACTCATC
CCATGAATCTCCTTAATGAGAGGACTCTTAAGGGTACCTTCTTTGGCAAC
TACAAACCTCGCTCTGATCTTCCTTCTGTTGTTGAAAAATACATGAACAA
GGAGTTGGAGGTCGAGAAATTCATCACTCACACTGTGCCCTTCTCGGAGA
TAAACAAGGCA
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