C21840

Overview
NameC21840
Unique NameC21840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length261
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4907 contig Csv1_Contig4907:644..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1_COTJA (Alcohol dehydrogenase 1 OS=Coturnix coturnix japonica GN=ADH1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.959e-12
Identity = 32/84 (38.10%), Postives = 50/84 (59.52%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINK 258
            +M  A    H  +GV+V+VGVP         PM + + RT KG+ FG +K +  +P +V  YM K+  ++  ITHT+PF++IN+
Sbjct:  275 TMTEALASCHYNYGVSVIVGVPPAAQKISFDPMLIFSGRTWKGSVFGGWKSKDAVPKLVADYMKKKFVLDPLITHTLPFTKINE 358          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1A_HUMAN (Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.959e-12
Identity = 30/84 (35.71%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINK 258
            +M+++  C H+  G +V+VGVP        +PM LL  RT KG   G +K +  +P +V  +M K+  ++  ITH +PF +IN+
Sbjct:  275 TMMASLLCCHEACGTSVIVGVPPDSQNLSMNPMLLLTGRTWKGAILGGFKSKECVPKLVADFMAKKFSLDALITHVLPFEKINE 358          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH4_HUMAN (Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE=1 SV=4)

HSP 1 Score: 68.1662 bits (165), Expect = 1.528e-11
Identity = 30/85 (35.29%), Postives = 46/85 (54.12%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            +M +A  C   GWG    +GV          P  L+  RT+ GTFFG +K    +P +V  Y NK+  ++  +THT+PF +I++A
Sbjct:  280 TMKAALDCTTAGWGSCTFIGVAAGSKGLTVFPEELIIGRTINGTFFGGWKSVDSIPKLVTDYKNKKFNLDALVTHTLPFDKISEA 364          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1A_PONAB (Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 1.528e-11
Identity = 30/83 (36.14%), Postives = 48/83 (57.83%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEIN 255
            +M+++  C H+  G +V+VGVP        +PM LL  RT KG   G +K +  +P +V  +M K+  ++  ITH +PF +IN
Sbjct:  275 TMMASLLCCHEACGTSVIVGVPPDSQNLSMNPMLLLTGRTWKGAVLGGFKSKECVPKLVADFMAKKFSLDALITHVLPFEKIN 357          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADHL2_ARATH (Alcohol dehydrogenase-like 2 OS=Arabidopsis thaliana GN=At1g22440 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.996e-11
Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   10 MISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            M  AF     G G  +++G+  K         +LL  RT+ GT FG  KP+ D+P +V++Y+ KEL +E  ITH + F EINKA
Sbjct:  285 MEEAFKSTRPGSGKTIVLGMEQKALPISLGSYDLLRGRTVCGTLFGGLKPKLDIPILVDRYLKKELNLEDLITHELSFEEINKA 368          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1_GADCA (Alcohol dehydrogenase 1 OS=Gadus callarias PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.996e-11
Identity = 30/74 (40.54%), Postives = 50/74 (67.57%), Query Frame = 1
Query:   40 GWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            GWGV+VLVG  +  D   T P+ L+  RT KG+ FG +K +  +P +V+ Y++K++++++FITH +P   +N A
Sbjct:  286 GWGVSVLVGWTDLHDV-ATRPIQLIAGRTWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDA 358          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH4_STRCA (Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH4 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.607e-11
Identity = 31/84 (36.90%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   10 MISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            M +AF     GWG  V+VGV   + +    PM L+  R +K TFFG +K    +P +V  YM K+ +++  ++HT+P  +IN A
Sbjct:  280 MKAAFESTTVGWGTCVIVGVAVGEQSIPFSPMQLIMGRKIKATFFGGWKSVKSVPKLVSDYMAKKFDLDALVSHTLPLDKINDA 363          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: FADH_PICPA (S-(hydroxymethyl)glutathione dehydrogenase OS=Pichia pastoris GN=FLD1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.404e-11
Identity = 30/84 (35.71%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   10 MISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            M +A    H GWG ++++GV        T P  L+  R  +G  FG  K R+ +PS+V+ Y++ +++V++FITH      INKA
Sbjct:  279 MRNALESCHKGWGESIIIGVAAAGKEISTRPFQLVTGRVWRGCAFGGIKGRTQMPSLVQDYLDGKIKVDEFITHRHDLDNINKA 362          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1G_PAPHA (Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH1C PE=2 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 3.404e-11
Identity = 28/84 (33.33%), Postives = 50/84 (59.52%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINK 258
            +++++  C H+  G +V+VGVP        +P+ LL  RT KG  FG +K +  +P +V  +M K+  ++  IT+ +PF +IN+
Sbjct:  275 TIMASLLCCHEACGTSVIVGVPPDSQNLSINPVLLLTGRTWKGAIFGGFKSKESVPKLVSDFMAKKFSLDALITNVLPFEKINE 358          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADHI_RHOS4 (Alcohol dehydrogenase class-3 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=adhI PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.446e-11
Identity = 29/83 (34.94%), Postives = 47/83 (56.63%), Query Frame = 1
Query:   10 MISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINK 258
            M  A    H GWG ++++GV       +T P  L+  R  KG+ FG  + R+D+P +V+ YM  +++++  ITH +   EINK
Sbjct:  277 MRQALEACHRGWGQSIVIGVAPAGAEIQTRPFQLVTGRVWKGSAFGGARGRTDVPKIVDWYMEGKIQIDPMITHILSLEEINK 359          
The following BLAST results are available for this feature:
BLAST of C21840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
ADH1_COTJA8.959e-1238.10Alcohol dehydrogenase 1 OS=Coturnix coturnix japon... [more]
ADH1A_HUMAN8.959e-1235.71Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A ... [more]
ADH4_HUMAN1.528e-1135.29Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE... [more]
ADH1A_PONAB1.528e-1136.14Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A ... [more]
ADHL2_ARATH1.996e-1140.48Alcohol dehydrogenase-like 2 OS=Arabidopsis thalia... [more]
ADH1_GADCA1.996e-1140.54Alcohol dehydrogenase 1 OS=Gadus callarias PE=1 SV... [more]
ADH4_STRCA2.607e-1136.90Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH... [more]
FADH_PICPA3.404e-1135.71S-(hydroxymethyl)glutathione dehydrogenase OS=Pich... [more]
ADH1G_PAPHA3.404e-1133.33Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH... [more]
ADHI_RHOS44.446e-1134.94Alcohol dehydrogenase class-3 OS=Rhodobacter sphae... [more]

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Properties
Property NameValue
Genbank descriptionC21840 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSG-21R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21840 ID=C21840; Name=C21840; organism=Citrus sinensis; type=EST; length=261bp
GGCACGAGCATGATTTCAGCATTTNANTGCNTTCACGATGGTTGGGGTGT
TGCTGTGCTTGTGGGTGTGCCAAACAAAGATGATGCATTCAAGACTCATC
CCATGAATCTCCTTAATGAGAGGACTCTTAAGGGTACCTTCTTTGGCAAC
TACAAACCTCGCTCTGATCTTCCTTCTGTTGTTGAAAAATACATGAACAA
GGAGTTGGAGGTCGAGAAATTCATCACTCACACTGTGCCCTTCTCGGAGA
TAAACAAGGCA
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