C21841

Overview
NameC21841
Unique NameC21841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length229
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_HAEPS (Malate dehydrogenase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.605e-11
Identity = 37/73 (50.68%), Postives = 45/73 (61.64%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V V G+ G+     AL G ++V+I AGV RKPGM R DL NINAGIV  L E +A  CP   V  I
Sbjct:   46 VSHIPTAVKVVGYAGEDPTP-ALEGANLVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVATVCPTACVGII 117          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_PSYIN (Malate dehydrogenase OS=Psychromonas ingrahamii (strain 37) GN=mdh PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.899e-11
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T+V V GF G      A+ G D+++I AGV RKPGM R DL NINAGI+  L   +A+  P+  +  I
Sbjct:   46 LSHIPTSVKVEGFAGTDPTA-AIEGADVILISAGVARKPGMDRSDLFNINAGIIKNLVAKVAEVAPEACIGII 117          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDHP_YEAST (Malate dehydrogenase, peroxisomal OS=Saccharomyces cerevisiae GN=MDH3 PE=1 SV=3)

HSP 1 Score: 65.4698 bits (158), Expect = 9.899e-11
Identity = 31/69 (44.93%), Postives = 45/69 (65.22%), Query Frame = 1
Query:    1 GXSISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCP 207
            G  +SH++TN    G+  +  + + L+   +V+IPAGVPRKPG+TRDDL  +NAGIV +L   + K  P
Sbjct:   42 GKDLSHINTNSSCVGYD-KDSIENTLSNAQVVLIPAGVPRKPGLTRDDLFKMNAGIVKSLVTAVGKFAP 109          
The following BLAST results are available for this feature:
BLAST of C21841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
MDH_HAEPS2.605e-1150.68Malate dehydrogenase OS=Haemophilus parasuis serov... [more]
MDH_PSYIN9.899e-1145.21Malate dehydrogenase OS=Psychromonas ingrahamii (s... [more]
MDHP_YEAST9.899e-1144.93Malate dehydrogenase, peroxisomal OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionC21841 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSP-38R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21841 ID=C21841; Name=C21841; organism=Citrus sinensis; type=EST; length=229bp
GGCANGAGTATCAGTCACATGGATACAAATGTTGTGGTACGAGGATTTNT
GGGGCAACAGCAATTGGNGGATGCCCTCACGGGCATGGACATTGTAATCA
TTCCCGCTGGTGTTCCTAGGAAACCTGGAATGACTAGGGATGATCTGNTC
AATATCAATGCCGGAATTGTTANGACCCTTTGTGAAGGAATAGCTAAGTG
CTGTCCAAAAGNTATTGTGAACTCGATTA
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