C21841

Overview
NameC21841
Unique NameC21841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length229
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDHM_RAT (Malate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Mdh2 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 7.078e-17
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIV 219
            +SH++T   V+G+ G +QL D L G D+V+IPAGVPRKPGMTRDDL N NA IV TL    A+ CP+ ++
Sbjct:   68 LSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMI 137          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDHP_ARATH (Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At3g47520 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.059e-16
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH +T   VR F G  +L D L  +++V+IPAGVPRKPGMTRDDL NINA IV TL E +A+ CP   ++ I
Sbjct:  126 LSHCNTPSQVRDFTGPSELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAENCPNAFIHII 198          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDHM_MACFA (Malate dehydrogenase, mitochondrial OS=Macaca fascicularis GN=MDH2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.059e-16
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIV 219
            +SH++T  VV+G+ G +QL D L G D+V+IPAGVPRKPGMTRDDL N NA IV TL    A+  P+ ++
Sbjct:   68 LSHIETKAVVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLAAACAQHRPEAMI 137          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_ALTMD (Malate dehydrogenase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=mdh PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.588e-16
Identity = 43/73 (58.90%), Postives = 50/73 (68.49%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V V G  G+  L DALTG D+V+IPAG+PRKPGM R DL NINAGIV  L EG+A  CP   V  I
Sbjct:   46 LSHIPTAVKVTGH-GKDDLADALTGADVVLIPAGMPRKPGMDRSDLFNINAGIVKNLIEGVADNCPNACVGII 117          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_PSEHT (Malate dehydrogenase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=mdh PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.022e-15
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V V GF G   L +AL   DIV+IPAG+PRKPGM R DL N+NAGI+ TL EGI   CPK +V  I
Sbjct:   46 LSHIPTAVKVAGF-GADALNEALKDADIVLIPAGMPRKPGMDRADLFNVNAGIIKTLAEGIVASCPKALVGII 117          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_IDILO (Malate dehydrogenase OS=Idiomarina loihiensis GN=mdh PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.022e-15
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T+V V GF G+  L  AL G DIV+IPAGVPRKPGM R DL N+NAGIV  L +G+A  CP   V  I
Sbjct:   46 LSHIPTDVKVTGF-GKDDLASALVGSDIVLIPAGVPRKPGMDRSDLFNMNAGIVKNLVQGVADNCPNACVGII 117          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_PSEA6 (Malate dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=mdh PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.335e-15
Identity = 41/67 (61.19%), Postives = 49/67 (73.13%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPK 210
            +SH+ T+V V GF G+  L  ALTG DIV+IPAGVPRKPGM R DL NINAGIV  L + +A  CP+
Sbjct:   46 LSHIPTDVKVEGF-GKDDLAKALTGSDIVLIPAGVPRKPGMDRSDLFNINAGIVRNLVDSVADNCPE 111          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDHM_CHLRE (Malate dehydrogenase, mitochondrial OS=Chlamydomonas reinhardtii PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.884e-15
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH++T   V+GF  +  L +AL G D+VIIPAGVPRKPGMTRDDL  INAGIV  L   + + CP  ++N I
Sbjct:  106 VSHINTKAQVKGFD-KDGLAEALRGCDLVIIPAGVPRKPGMTRDDLFKINAGIVRDLVTAVGQHCPGAVLNII 177          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_SHEFN (Malate dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=mdh PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.072e-15
Identity = 41/73 (56.16%), Postives = 50/73 (68.49%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T+V V+GF GQ    DAL G D+V++ AGV RKPGM R DL NINAGIV  L E +A  CPK +V  I
Sbjct:   46 LSHIPTDVEVKGFAGQDPT-DALVGADVVLMSAGVARKPGMDRSDLFNINAGIVRNLMEKVAVTCPKALVGII 117          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDHM_CAEEL (Probable malate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=mdh-1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.625e-15
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIV 219
            +SH+D+N  V    G ++L  A+   D+++IPAGVPRKPGMTRDDL N NAGIV  L   IAK  PK ++
Sbjct:   72 LSHIDSNAKVTAHTGPKELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAVIAKASPKALI 141          
The following BLAST results are available for this feature:
BLAST of C21841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
MDHM_RAT7.078e-1755.71Malate dehydrogenase, mitochondrial OS=Rattus norv... [more]
MDHP_ARATH2.059e-1654.79Malate dehydrogenase, chloroplastic OS=Arabidopsis... [more]
MDHM_MACFA2.059e-1655.71Malate dehydrogenase, mitochondrial OS=Macaca fasc... [more]
MDH_ALTMD4.588e-1658.90Malate dehydrogenase OS=Alteromonas macleodii (str... [more]
MDH_PSEHT1.022e-1557.53Malate dehydrogenase OS=Pseudoalteromonas haloplan... [more]
MDH_IDILO1.022e-1557.53Malate dehydrogenase OS=Idiomarina loihiensis GN=m... [more]
MDH_PSEA61.335e-1561.19Malate dehydrogenase OS=Pseudoalteromonas atlantic... [more]
MDHM_CHLRE3.884e-1554.79Malate dehydrogenase, mitochondrial OS=Chlamydomon... [more]
MDH_SHEFN5.072e-1556.16Malate dehydrogenase OS=Shewanella frigidimarina (... [more]
MDHM_CAEEL6.625e-1552.86Probable malate dehydrogenase, mitochondrial OS=Ca... [more]

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Properties
Property NameValue
Genbank descriptionC21841 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSP-38R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21841 ID=C21841; Name=C21841; organism=Citrus sinensis; type=EST; length=229bp
GGCANGAGTATCAGTCACATGGATACAAATGTTGTGGTACGAGGATTTNT
GGGGCAACAGCAATTGGNGGATGCCCTCACGGGCATGGACATTGTAATCA
TTCCCGCTGGTGTTCCTAGGAAACCTGGAATGACTAGGGATGATCTGNTC
AATATCAATGCCGGAATTGTTANGACCCTTTGTGAAGGAATAGCTAAGTG
CTGTCCAAAAGNTATTGTGAACTCGATTA
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