C21841

Overview
NameC21841
Unique NameC21841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length229
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_SALG2 (Malate dehydrogenase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=mdh PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.566e-14
Identity = 39/73 (53.42%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G D+V+I AGV RKPGM R DL N+NAGIV  L + IAK CPK  V  I
Sbjct:   46 LSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_SALEP (Malate dehydrogenase OS=Salmonella enteritidis PT4 (strain P125109) GN=mdh PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.566e-14
Identity = 39/73 (53.42%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G D+V+I AGV RKPGM R DL N+NAGIV  L + IAK CPK  V  I
Sbjct:   46 LSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_SALCH (Malate dehydrogenase OS=Salmonella choleraesuis GN=mdh PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.566e-14
Identity = 39/73 (53.42%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G D+V+I AGV RKPGM R DL N+NAGIV  L + IAK CPK  V  I
Sbjct:   46 LSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_SALAR (Malate dehydrogenase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=mdh PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.566e-14
Identity = 39/73 (53.42%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G D+V+I AGV RKPGM R DL N+NAGIV  L + IAK CPK  V  I
Sbjct:   46 LSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_SALA4 (Malate dehydrogenase OS=Salmonella agona (strain SL483) GN=mdh PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.566e-14
Identity = 39/73 (53.42%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G D+V+I AGV RKPGM R DL N+NAGIV  L + IAK CPK  V  I
Sbjct:   46 LSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_PASMU (Malate dehydrogenase OS=Pasteurella multocida GN=mdh PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.566e-14
Identity = 40/73 (54.79%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V V+GF G+     AL G D+V+I AGV RKPGM R DL NINAGIV  L E +A+ CPK  V  I
Sbjct:   46 VSHIPTAVKVQGFAGEDPTP-ALQGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAQVCPKACVGII 117          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_HAES2 (Malate dehydrogenase OS=Haemophilus somnus (strain 2336) GN=mdh PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.566e-14
Identity = 39/73 (53.42%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+  +  AL   D+V+I AGV RKPGM R DL NINAGIV  L E +AK CPK  V  I
Sbjct:   46 VSHIPTAVKIQGFAGEDPIP-ALENADVVLISAGVARKPGMDRSDLFNINAGIVKNLIEKVAKTCPKACVGII 117          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_AERHH (Malate dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=mdh PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.566e-14
Identity = 39/73 (53.42%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T+V V+GF G+     AL G D+V+I AGV RKPGM R DL NINAGIV  L E  A  CPK ++  I
Sbjct:   46 LSHIPTDVKVKGFCGEDP-SPALVGADVVLISAGVARKPGMDRSDLFNINAGIVKNLVEKCAASCPKALIGII 117          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_SHEWM (Malate dehydrogenase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=mdh PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.249e-13
Identity = 40/73 (54.79%), Postives = 47/73 (64.38%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V V+GF GQ     AL G D+V+I AGV RKPGM R DL NINAGIV  L E  A  CPK ++  I
Sbjct:   46 LSHIPTAVEVKGFAGQDP-SPALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLVEKCAATCPKALIGII 117          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_SHESA (Malate dehydrogenase OS=Shewanella sp. (strain ANA-3) GN=mdh PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.249e-13
Identity = 39/73 (53.42%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G D+V+I AGV RKPGM R DL NINAGIV  L E +A  CPK +V  I
Sbjct:   46 LSHIPTAVEIKGFAGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAVTCPKALVGII 117          
The following BLAST results are available for this feature:
BLAST of C21841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
MDH_SALG29.566e-1453.42Malate dehydrogenase OS=Salmonella gallinarum (str... [more]
MDH_SALEP9.566e-1453.42Malate dehydrogenase OS=Salmonella enteritidis PT4... [more]
MDH_SALCH9.566e-1453.42Malate dehydrogenase OS=Salmonella choleraesuis GN... [more]
MDH_SALAR9.566e-1453.42Malate dehydrogenase OS=Salmonella arizonae (strai... [more]
MDH_SALA49.566e-1453.42Malate dehydrogenase OS=Salmonella agona (strain S... [more]
MDH_PASMU9.566e-1454.79Malate dehydrogenase OS=Pasteurella multocida GN=m... [more]
MDH_HAES29.566e-1453.42Malate dehydrogenase OS=Haemophilus somnus (strain... [more]
MDH_AERHH9.566e-1453.42Malate dehydrogenase OS=Aeromonas hydrophila subsp... [more]
MDH_SHEWM1.249e-1354.79Malate dehydrogenase OS=Shewanella woodyi (strain ... [more]
MDH_SHESA1.249e-1353.42Malate dehydrogenase OS=Shewanella sp. (strain ANA... [more]

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Properties
Property NameValue
Genbank descriptionC21841 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSP-38R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21841 ID=C21841; Name=C21841; organism=Citrus sinensis; type=EST; length=229bp
GGCANGAGTATCAGTCACATGGATACAAATGTTGTGGTACGAGGATTTNT
GGGGCAACAGCAATTGGNGGATGCCCTCACGGGCATGGACATTGTAATCA
TTCCCGCTGGTGTTCCTAGGAAACCTGGAATGACTAGGGATGATCTGNTC
AATATCAATGCCGGAATTGTTANGACCCTTTGTGAAGGAATAGCTAAGTG
CTGTCCAAAAGNTATTGTGAACTCGATTA
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