C21841

Overview
NameC21841
Unique NameC21841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length229
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_KLEP3 (Malate dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.632e-13
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T+V ++GF G+     AL G D+V+I AGV RKPGM R DL N+NAGIV  L + IAK CP+  +  I
Sbjct:   46 LSHIPTDVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPQACIGVI 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_ERWT9 (Malate dehydrogenase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.632e-13
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T+V + GF G+     AL G D+V+I AGV RKPGM R DL N+NAGIV  L E +A  CPK ++  I
Sbjct:   46 LSHIPTSVKIAGFSGEDATP-ALKGADVVLISAGVARKPGMDRSDLFNVNAGIVRNLIEQVAATCPKALIGII 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_ECOUT (Malate dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=mdh PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.632e-13
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G D+V+I AGV RKPGM R DL N+NAGIV  L + +AK CPK  +  I
Sbjct:   46 LSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_ECOSM (Malate dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.632e-13
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G D+V+I AGV RKPGM R DL N+NAGIV  L + +AK CPK  +  I
Sbjct:   46 LSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_ECOLI (Malate dehydrogenase OS=Escherichia coli (strain K12) GN=mdh PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.632e-13
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G D+V+I AGV RKPGM R DL N+NAGIV  L + +AK CPK  +  I
Sbjct:   46 LSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_ECOL6 (Malate dehydrogenase OS=Escherichia coli O6 GN=mdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.632e-13
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G D+V+I AGV RKPGM R DL N+NAGIV  L + +AK CPK  +  I
Sbjct:   46 LSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_ECOL5 (Malate dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.632e-13
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G D+V+I AGV RKPGM R DL N+NAGIV  L + +AK CPK  +  I
Sbjct:   46 LSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_ECOK1 (Malate dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=mdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.632e-13
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G D+V+I AGV RKPGM R DL N+NAGIV  L + +AK CPK  +  I
Sbjct:   46 LSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_ECOHS (Malate dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.632e-13
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G D+V+I AGV RKPGM R DL N+NAGIV  L + +AK CPK  +  I
Sbjct:   46 LSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_ECODH (Malate dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.632e-13
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G D+V+I AGV RKPGM R DL N+NAGIV  L + +AK CPK  +  I
Sbjct:   46 LSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
The following BLAST results are available for this feature:
BLAST of C21841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
MDH_KLEP31.632e-1350.68Malate dehydrogenase OS=Klebsiella pneumoniae (str... [more]
MDH_ERWT91.632e-1350.68Malate dehydrogenase OS=Erwinia tasmaniensis (stra... [more]
MDH_ECOUT1.632e-1350.68Malate dehydrogenase OS=Escherichia coli (strain U... [more]
MDH_ECOSM1.632e-1350.68Malate dehydrogenase OS=Escherichia coli (strain S... [more]
MDH_ECOLI1.632e-1350.68Malate dehydrogenase OS=Escherichia coli (strain K... [more]
MDH_ECOL61.632e-1350.68Malate dehydrogenase OS=Escherichia coli O6 GN=mdh... [more]
MDH_ECOL51.632e-1350.68Malate dehydrogenase OS=Escherichia coli O6:K15:H3... [more]
MDH_ECOK11.632e-1350.68Malate dehydrogenase OS=Escherichia coli O1:K1 / A... [more]
MDH_ECOHS1.632e-1350.68Malate dehydrogenase OS=Escherichia coli O9:H4 (st... [more]
MDH_ECODH1.632e-1350.68Malate dehydrogenase OS=Escherichia coli (strain K... [more]

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Properties
Property NameValue
Genbank descriptionC21841 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSP-38R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21841 ID=C21841; Name=C21841; organism=Citrus sinensis; type=EST; length=229bp
GGCANGAGTATCAGTCACATGGATACAAATGTTGTGGTACGAGGATTTNT
GGGGCAACAGCAATTGGNGGATGCCCTCACGGGCATGGACATTGTAATCA
TTCCCGCTGGTGTTCCTAGGAAACCTGGAATGACTAGGGATGATCTGNTC
AATATCAATGCCGGAATTGTTANGACCCTTTGTGAAGGAATAGCTAAGTG
CTGTCCAAAAGNTATTGTGAACTCGATTA
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