C21841

Overview
NameC21841
Unique NameC21841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length229
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_YERPY (Malate dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.131e-13
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G DIV+I AGV RKPGM R DL N+NAGIV  L E IA+ CP  ++  I
Sbjct:   46 LSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_YERPS (Malate dehydrogenase OS=Yersinia pseudotuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.131e-13
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G DIV+I AGV RKPGM R DL N+NAGIV  L E IA+ CP  ++  I
Sbjct:   46 LSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_YERPP (Malate dehydrogenase OS=Yersinia pestis (strain Pestoides F) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.131e-13
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G DIV+I AGV RKPGM R DL N+NAGIV  L E IA+ CP  ++  I
Sbjct:   46 LSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_YERPN (Malate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.131e-13
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G DIV+I AGV RKPGM R DL N+NAGIV  L E IA+ CP  ++  I
Sbjct:   46 LSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_YERPG (Malate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.131e-13
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G DIV+I AGV RKPGM R DL N+NAGIV  L E IA+ CP  ++  I
Sbjct:   46 LSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_YERPE (Malate dehydrogenase OS=Yersinia pestis GN=mdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.131e-13
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G DIV+I AGV RKPGM R DL N+NAGIV  L E IA+ CP  ++  I
Sbjct:   46 LSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_YERPB (Malate dehydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.131e-13
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G DIV+I AGV RKPGM R DL N+NAGIV  L E IA+ CP  ++  I
Sbjct:   46 LSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_YERPA (Malate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.131e-13
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G DIV+I AGV RKPGM R DL N+NAGIV  L E IA+ CP  ++  I
Sbjct:   46 LSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_YERP3 (Malate dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.131e-13
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G DIV+I AGV RKPGM R DL N+NAGIV  L E IA+ CP  ++  I
Sbjct:   46 LSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_SHESH (Malate dehydrogenase OS=Shewanella sediminis (strain HAW-EB3) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.131e-13
Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V V+GF G+     AL G D+V+I AGV RKPGM R DL NINAGIV  L E  A  CPK ++  I
Sbjct:   46 LSHIPTAVEVKGFAGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLVEKCAAACPKALIGII 117
The following BLAST results are available for this feature:
BLAST of C21841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
MDH_YERPY2.131e-1352.05Malate dehydrogenase OS=Yersinia pseudotuberculosi... [more]
MDH_YERPS2.131e-1352.05Malate dehydrogenase OS=Yersinia pseudotuberculosi... [more]
MDH_YERPP2.131e-1352.05Malate dehydrogenase OS=Yersinia pestis (strain Pe... [more]
MDH_YERPN2.131e-1352.05Malate dehydrogenase OS=Yersinia pestis bv. Antiqu... [more]
MDH_YERPG2.131e-1352.05Malate dehydrogenase OS=Yersinia pestis bv. Antiqu... [more]
MDH_YERPE2.131e-1352.05Malate dehydrogenase OS=Yersinia pestis GN=mdh PE=... [more]
MDH_YERPB2.131e-1352.05Malate dehydrogenase OS=Yersinia pseudotuberculosi... [more]
MDH_YERPA2.131e-1352.05Malate dehydrogenase OS=Yersinia pestis bv. Antiqu... [more]
MDH_YERP32.131e-1352.05Malate dehydrogenase OS=Yersinia pseudotuberculosi... [more]
MDH_SHESH2.131e-1353.42Malate dehydrogenase OS=Shewanella sediminis (stra... [more]

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Properties
Property NameValue
Genbank descriptionC21841 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSP-38R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21841 ID=C21841; Name=C21841; organism=Citrus sinensis; type=EST; length=229bp
GGCANGAGTATCAGTCACATGGATACAAATGTTGTGGTACGAGGATTTNT
GGGGCAACAGCAATTGGNGGATGCCCTCACGGGCATGGACATTGTAATCA
TTCCCGCTGGTGTTCCTAGGAAACCTGGAATGACTAGGGATGATCTGNTC
AATATCAATGCCGGAATTGTTANGACCCTTTGTGAAGGAATAGCTAAGTG
CTGTCCAAAAGNTATTGTGAACTCGATTA
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