C21854

Overview
NameC21854
Unique NameC21854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length282
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9695 contig Csv1_Contig9695:269..551. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC8_ARATH (Rac-like GTP-binding protein ARAC8 OS=Arabidopsis thaliana GN=ARAC8 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 2.511e-33
Identity = 64/80 (80.00%), Postives = 69/80 (86.25%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYETFLR 244
            + CMLI YTSNKFPTDYIPTVFDNFS N  V+G  VNLGLWDTAGQEDY+RLRPLSYRGAD+F LAFSLISRASYE   +
Sbjct:   21 KTCMLICYTSNKFPTDYIPTVFDNFSVNVVVEGITVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVFK 100

HSP 2 Score: 25.7942 bits (55), Expect = 2.511e-33
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:  232 NVLKKWMPELRRF 270
            NV KKW+PEL+ F
Sbjct:   97 NVFKKWIPELQHF 109
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC4_ARATH (Rac-like GTP-binding protein ARAC4 OS=Arabidopsis thaliana GN=ARAC4 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.514e-33
Identity = 63/80 (78.75%), Postives = 70/80 (87.50%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYETFLR 244
            + CMLI YTSN FPTDY+PTVFDNFSAN  VDG+ VNLGLWDTAGQEDY+RLRPLSYRGAD+F LAFSLIS+ASYE   +
Sbjct:   18 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAK 97

HSP 2 Score: 25.409 bits (54), Expect = 2.514e-33
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:  232 NVLKKWMPELRRF 270
            N+ KKW+PELR +
Sbjct:   94 NIAKKWIPELRHY 106
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC1_LOTJA (Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.514e-33
Identity = 63/80 (78.75%), Postives = 70/80 (87.50%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYETFLR 244
            + C+LI YTSN FPTDY+PTVFDNFSAN  VDGS VNLGLWDTAGQEDY+RLRPLSYRGAD+F LAFSLIS+ASYE   +
Sbjct:   19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAK 98

HSP 2 Score: 25.409 bits (54), Expect = 2.514e-33
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:  232 NVLKKWMPELRRF 270
            N+ KKW+PELR +
Sbjct:   95 NIAKKWIPELRHY 107
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC5_ARATH (Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.514e-33
Identity = 63/76 (82.89%), Postives = 69/76 (90.79%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + CMLI YTSN FPTDY+PTVFDNFSAN  VDG+ VNLGLWDTAGQEDY+RLRPLSYRGAD+F LAFSLIS+ASYE
Sbjct:   19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 94

HSP 2 Score: 25.7942 bits (55), Expect = 2.514e-33
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:  232 NVLKKWMPELRRF 270
            NV KKW+PELR +
Sbjct:   95 NVAKKWIPELRHY 107
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC2_ARATH (Rac-like GTP-binding protein ARAC2 OS=Arabidopsis thaliana GN=ARAC2 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.261e-33
Identity = 64/76 (84.21%), Postives = 69/76 (90.79%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + CMLI YTSN FPTDY+PTVFDNFSAN  VDGS VNLGLWDTAGQEDY+RLRPLSYRGAD+F LAFSLIS+ASYE
Sbjct:   19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYE 94

HSP 2 Score: 23.8682 bits (50), Expect = 4.261e-33
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:  232 NVLKKWMPELRRF 270
            N+ KKW+PEL+ +
Sbjct:   95 NIHKKWLPELKHY 107
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC7_ORYSJ (Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica GN=RAC7 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.554e-33
Identity = 63/76 (82.89%), Postives = 69/76 (90.79%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + CMLI YTSN FPTDY+PTVFDNFSAN  VDG+ VNLGLWDTAGQEDY+RLRPLSYRGAD+F LAFSLIS+ASYE
Sbjct:   19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYE 94

HSP 2 Score: 24.6386 bits (52), Expect = 5.554e-33
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:  232 NVLKKWMPELRRF 270
            N+ KKW+PELR +
Sbjct:   95 NIHKKWIPELRHY 107
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC6_ORYSJ (Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.234e-33
Identity = 63/76 (82.89%), Postives = 69/76 (90.79%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + CMLI YTSN FPTDY+PTVFDNFSAN  VDG+ VNLGLWDTAGQEDY+RLRPLSYRGAD+F LAFSLIS+ASYE
Sbjct:   19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYE 94

HSP 2 Score: 24.2534 bits (51), Expect = 7.234e-33
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:  232 NVLKKWMPELRRF 270
            NV KKW+PEL+ +
Sbjct:   95 NVSKKWIPELKHY 107
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC3_ARATH (Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.597e-32
Identity = 60/76 (78.95%), Postives = 69/76 (90.79%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YTSN FPTDY+PTVFDNFSAN  VDG+ +NLGLWDTAGQEDY+RLRPLSYRGAD+F LAFSL+S+ASYE
Sbjct:   19 KTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYE 94

HSP 2 Score: 25.409 bits (54), Expect = 1.597e-32
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:  232 NVLKKWMPELRRF 270
            NV KKW+PELR +
Sbjct:   95 NVSKKWVPELRHY 107
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHO1_PEA (Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.710e-32
Identity = 62/76 (81.58%), Postives = 69/76 (90.79%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YTSN FPTDY+PTVFDNFSAN  V+GS VNLGLWDTAGQEDY+RLRPLSYRGAD+F LAFSLIS+ASYE
Sbjct:   19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 94

HSP 2 Score: 24.2534 bits (51), Expect = 2.710e-32
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:  232 NVLKKWMPELRRF 270
            NV KKW+PEL+ +
Sbjct:   95 NVSKKWIPELKHY 107
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC11_ARATH (Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.710e-32
Identity = 62/76 (81.58%), Postives = 69/76 (90.79%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YTSN FPTDY+PTVFDNFSAN  V+GS VNLGLWDTAGQEDY+RLRPLSYRGAD+F LAFSLIS+ASYE
Sbjct:   19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 94

HSP 2 Score: 24.2534 bits (51), Expect = 2.710e-32
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:  232 NVLKKWMPELRRF 270
            NV KKW+PEL+ +
Sbjct:   95 NVSKKWIPELKHY 107
The following BLAST results are available for this feature:
BLAST of C21854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
RAC8_ARATH2.511e-3380.00Rac-like GTP-binding protein ARAC8 OS=Arabidopsis ... [more]
RAC4_ARATH2.514e-3378.75Rac-like GTP-binding protein ARAC4 OS=Arabidopsis ... [more]
RAC1_LOTJA2.514e-3378.75Rac-like GTP-binding protein RAC1 OS=Lotus japonic... [more]
RAC5_ARATH2.514e-3382.89Rac-like GTP-binding protein ARAC5 OS=Arabidopsis ... [more]
RAC2_ARATH4.261e-3384.21Rac-like GTP-binding protein ARAC2 OS=Arabidopsis ... [more]
RAC7_ORYSJ5.554e-3382.89Rac-like GTP-binding protein 7 OS=Oryza sativa sub... [more]
RAC6_ORYSJ7.234e-3382.89Rac-like GTP-binding protein 6 OS=Oryza sativa sub... [more]
RAC3_ARATH1.597e-3278.95Rac-like GTP-binding protein ARAC3 OS=Arabidopsis ... [more]
RHO1_PEA2.710e-3281.58Rac-like GTP-binding protein RHO1 OS=Pisum sativum... [more]
RAC11_ARATH2.710e-3281.58Rac-like GTP-binding protein ARAC11 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC21854 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSN-28R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21854 ID=C21854; Name=C21854; organism=Citrus sinensis; type=EST; length=282bp
GGCACGAGCATGTATGCTCATTTNTTACACAAGTAACAAGTTCCCCACTG
ATTACATACCCACAGTGTTTGATAATTTCAGTGCCAATNTTGCTGTTGAT
GGTAGTATTGTGAACCTGGGCTTATGGGATACTGCAGGGCAGGAAGATTA
TAGCAGGTTGAGGCCACTGAGTTACAGAGGTGCAGACATTTTTNTNCTGG
CTTTCTCATTAATTAGTAGGGCAAGTTATGAAACGTTCTTAAGAAGTGGA
TGCCTGAACTTCGACGNTTCGACCAATGTACC
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