C21854

Overview
NameC21854
Unique NameC21854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length282
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOQ_RAT (Rho-related GTP-binding protein RhoQ OS=Rattus norvegicus GN=Rhoq PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.398e-17
Identity = 37/76 (48.68%), Postives = 56/76 (73.68%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+L+ Y ++ FP +Y+PTVFD+++ +  V G    LGL+DTAGQEDY RLRPLSY   D+F + FS+++ AS++
Sbjct:   22 KTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQ 97          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOQ_MOUSE (Rho-related GTP-binding protein RhoQ OS=Mus musculus GN=Rhoq PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.398e-17
Identity = 37/76 (48.68%), Postives = 56/76 (73.68%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+L+ Y ++ FP +Y+PTVFD+++ +  V G    LGL+DTAGQEDY RLRPLSY   D+F + FS+++ AS++
Sbjct:   22 KTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQ 97          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOQ_HUMAN (Rho-related GTP-binding protein RhoQ OS=Homo sapiens GN=RHOQ PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.398e-17
Identity = 37/76 (48.68%), Postives = 56/76 (73.68%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+L+ Y ++ FP +Y+PTVFD+++ +  V G    LGL+DTAGQEDY RLRPLSY   D+F + FS+++ AS++
Sbjct:   22 KTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQ 97          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOJ_MOUSE (Rho-related GTP-binding protein RhoJ OS=Mus musculus GN=Rhoj PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.826e-17
Identity = 37/75 (49.33%), Postives = 55/75 (73.33%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASY 229
            + C+L+ Y ++ FP +Y+PTVFD+++    V G    LGL+DTAGQEDY++LRPLSY   D+F + FS+++ ASY
Sbjct:   34 KTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASY 108          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOJ_HUMAN (Rho-related GTP-binding protein RhoJ OS=Homo sapiens GN=RHOJ PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.826e-17
Identity = 37/75 (49.33%), Postives = 55/75 (73.33%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASY 229
            + C+L+ Y ++ FP +Y+PTVFD+++    V G    LGL+DTAGQEDY++LRPLSY   D+F + FS+++ ASY
Sbjct:   34 KTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASY 108          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHO1_KLULA (GTP-binding protein Rho1 OS=Kluyveromyces lactis GN=RHO1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.938e-17
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSL 211
            + C+LI +   KFP  Y+PTVFDN+ A+  VDG  V L LWDTAGQEDY RLRPLSY  +++  + +S+
Sbjct:   25 KTCLLIVFAKGKFPQVYVPTVFDNYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICYSI 93          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHO1_ASHGO (GTP-binding protein RHO1 OS=Ashbya gossypii GN=RHO1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.938e-17
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSL 211
            + C+LI +   KFP  Y+PTVFDN+ A+  VDG  V L LWDTAGQEDY RLRPLSY  +++  + +S+
Sbjct:   24 KTCLLIVFAKGKFPQVYVPTVFDNYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICYSI 92          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHO1_CANAL (GTP-binding protein RHO1 OS=Candida albicans GN=RHO1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.061e-17
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYETFL 241
            + C+LI ++   FP  Y+PTVF+N+ A+  VDG  V L LWDTAGQEDY RLRPLSY  +++  + FS+ S  S +  L
Sbjct:   22 KTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRKVELALWDTAGQEDYDRLRPLSYPDSNVILICFSVDSPDSLDNVL 100          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: CRL1_CANAL (GTP-binding RHO-like protein OS=Candida albicans GN=CRL1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.183e-16
Identity = 39/77 (50.65%), Postives = 54/77 (70.13%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNF-SANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+L+ YT NKFP+ Y+PTVF+N+ +A  + +G  V L LWDTAGQE+Y RLRPLSY   DI  + F++ +  S E
Sbjct:   88 KTCLLLAYTQNKFPSIYVPTVFENYVTAVQSPNGKTVELALWDTAGQEEYDRLRPLSYPDVDILLVCFAVDNEVSLE 164          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHO1_YEAST (GTP-binding protein RHO1 OS=Saccharomyces cerevisiae GN=RHO1 PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.019e-16
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSL 211
            + C+LI ++  +FP  Y+PTVF+N+ A+  VDG  V L LWDTAGQEDY RLRPLSY  +++  + FS+
Sbjct:   23 KTCLLIVFSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSI 91          
The following BLAST results are available for this feature:
BLAST of C21854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
RHOQ_RAT1.398e-1748.68Rho-related GTP-binding protein RhoQ OS=Rattus nor... [more]
RHOQ_MOUSE1.398e-1748.68Rho-related GTP-binding protein RhoQ OS=Mus muscul... [more]
RHOQ_HUMAN1.398e-1748.68Rho-related GTP-binding protein RhoQ OS=Homo sapie... [more]
RHOJ_MOUSE1.826e-1749.33Rho-related GTP-binding protein RhoJ OS=Mus muscul... [more]
RHOJ_HUMAN1.826e-1749.33Rho-related GTP-binding protein RhoJ OS=Homo sapie... [more]
RHO1_KLULA6.938e-1753.62GTP-binding protein Rho1 OS=Kluyveromyces lactis G... [more]
RHO1_ASHGO6.938e-1753.62GTP-binding protein RHO1 OS=Ashbya gossypii GN=RHO... [more]
RHO1_CANAL9.061e-1749.37GTP-binding protein RHO1 OS=Candida albicans GN=RH... [more]
CRL1_CANAL1.183e-1650.65GTP-binding RHO-like protein OS=Candida albicans G... [more]
RHO1_YEAST2.019e-1652.17GTP-binding protein RHO1 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionC21854 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSN-28R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21854 ID=C21854; Name=C21854; organism=Citrus sinensis; type=EST; length=282bp
GGCACGAGCATGTATGCTCATTTNTTACACAAGTAACAAGTTCCCCACTG
ATTACATACCCACAGTGTTTGATAATTTCAGTGCCAATNTTGCTGTTGAT
GGTAGTATTGTGAACCTGGGCTTATGGGATACTGCAGGGCAGGAAGATTA
TAGCAGGTTGAGGCCACTGAGTTACAGAGGTGCAGACATTTTTNTNCTGG
CTTTCTCATTAATTAGTAGGGCAAGTTATGAAACGTTCTTAAGAAGTGGA
TGCCTGAACTTCGACGNTTCGACCAATGTACC
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