C21854

Overview
NameC21854
Unique NameC21854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length282
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RACL_DICDI (Rho-related protein racL OS=Dictyostelium discoideum GN=racL PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.497e-16
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASY 229
            +  +LI + S +FP DY PTVFDNFS          NLGL+DTAGQED+ RLRPL Y   D+F + +S+I+  SY
Sbjct:   16 KTSLLIAFASGEFPRDYQPTVFDNFSTLYMFQNKAYNLGLFDTAGQEDFDRLRPLGYNDTDLFLICYSVINPPSY 90          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOA_EMENI (GTP-binding protein rhoA OS=Emericella nidulans GN=rhoA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.873e-16
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI ++   FP  Y+PTVF+N+ A+  VDG  V L LWDTAGQEDY RLRPLSY  + +  + F++ S  S +
Sbjct:   18 KTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLD 93          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHO1_SCHPO (GTP-binding protein rho1 OS=Schizosaccharomyces pombe GN=rho1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.671e-16
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI ++   FP  Y+PTVF+N+ A+  VDG  V L LWDTAGQEDY RLRPLSY  + +  + F++ S  S +
Sbjct:   19 KTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLD 94          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHO5_YEAST (GTP-binding protein RHO5 OS=Saccharomyces cerevisiae GN=RHO5 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.864e-16
Identity = 42/105 (40.00%), Postives = 53/105 (50.48%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAV------------------------------DGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASY 229
            +  +LI YT+N FPTDY+PTVFDN+S   A+                              D  +  + LWDTAGQEDY RLRPL Y   DIF + FS+   AS+
Sbjct:   16 KTSLLISYTTNSFPTDYVPTVFDNYSTTIAIPNGTASSPLELDNGNDKRGSLSSASSSPSTDRKLYKINLWDTAGQEDYDRLRPLCYPQTDIFLICFSVSEHASF 120          

HSP 2 Score: 22.7126 bits (47), Expect = 7.864e-16
Identity = 7/12 (58.33%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  232 NVLKKWMPELRR 267
            NV +KW+PEL++
Sbjct:  122 NVTEKWLPELKQ 133          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHO5_SCHPO (GTP-binding protein rho5 OS=Schizosaccharomyces pombe GN=rho5 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.002e-15
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSL 211
            + C+LI ++   FP  Y+PTVF+N+ A+  VDG  + L LWDTAGQEDY RLRPLSY  + +  + FS+
Sbjct:   19 KTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDYDRLRPLSYPDSHVVLICFSV 87          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RACG_DICDI (Rho-related protein racG OS=Dictyostelium discoideum GN=racG PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.308e-15
Identity = 40/81 (49.38%), Postives = 52/81 (64.20%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYETFLRS 247
            +  ML+ YTSN    +Y PTVFDN+S     +    NL LWDTAGQE++S+LR LSY   D+F L FSLI+ +S+   L S
Sbjct:   16 KTSMLLSYTSNSISNEYQPTVFDNYSTLLMHNKKPYNLSLWDTAGQEEFSKLRRLSYPQTDVFLLCFSLINPSSFSNILDS 96          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHO2_SCHPO (GTP-binding protein rho2 OS=Schizosaccharomyces pombe GN=rho2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.232e-15
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            +  +L  +T   FPT+Y+PTVF+N+ ++  VDG  V L LWDTAGQE+Y RLRP+SY  A I  + F++ S  S E
Sbjct:   21 KTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLE 96          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHO4_ASHGO (GTP-binding protein RHO4 OS=Ashbya gossypii GN=RHO4 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.494e-15
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANX-AVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRAS 226
            +  +L+ YT  +FP DY+PT+F+N+  N     G ++ L LWDTAGQE+YSRLRPLSY   DI  + ++  +R S
Sbjct:   65 KTSLLMSYTQGQFPEDYVPTIFENYVTNIEGPRGKVIELALWDTAGQEEYSRLRPLSYGDVDIVMVCYAADNRTS 139          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOV_RAT (Rho-related GTP-binding protein RhoV OS=Rattus norvegicus GN=Rhov PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.092e-14
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            ++ +++ YT N +P+ Y PT  D FS    VDG+ V + LWDTAGQED+ RLR L Y   D+F   FS++  +S++
Sbjct:   44 KSSLIVSYTCNGYPSRYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDFDRLRSLCYPDTDVFLACFSVVQPSSFQ 119          

HSP 2 Score: 22.3274 bits (46), Expect = 1.092e-14
Identity = 6/11 (54.55%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  232 NVLKKWMPELR 264
            N+ +KW+PE+R
Sbjct:  120 NITEKWLPEIR 130          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOV_MOUSE (Rho-related GTP-binding protein RhoV OS=Mus musculus GN=Rhov PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.419e-14
Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            ++ +++ YT N +P  Y PT  D FS    VDG+ V + LWDTAGQED+ RLR L Y   D+F   FS++  +S++
Sbjct:   44 KSSLIVSYTCNGYPARYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDFDRLRSLCYPDTDVFLACFSVVQPSSFQ 119          

HSP 2 Score: 22.3274 bits (46), Expect = 1.419e-14
Identity = 6/11 (54.55%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  232 NVLKKWMPELR 264
            N+ +KW+PE+R
Sbjct:  120 NITEKWLPEIR 130          
The following BLAST results are available for this feature:
BLAST of C21854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
RACL_DICDI4.497e-1650.67Rho-related protein racL OS=Dictyostelium discoide... [more]
RHOA_EMENI5.873e-1648.68GTP-binding protein rhoA OS=Emericella nidulans GN... [more]
RHO1_SCHPO7.671e-1648.68GTP-binding protein rho1 OS=Schizosaccharomyces po... [more]
RHO5_YEAST7.864e-1640.00GTP-binding protein RHO5 OS=Saccharomyces cerevisi... [more]
RHO5_SCHPO1.002e-1550.72GTP-binding protein rho5 OS=Schizosaccharomyces po... [more]
RACG_DICDI1.308e-1549.38Rho-related protein racG OS=Dictyostelium discoide... [more]
RHO2_SCHPO2.232e-1548.68GTP-binding protein rho2 OS=Schizosaccharomyces po... [more]
RHO4_ASHGO6.494e-1546.67GTP-binding protein RHO4 OS=Ashbya gossypii GN=RHO... [more]
RHOV_RAT1.092e-1443.42Rho-related GTP-binding protein RhoV OS=Rattus nor... [more]
RHOV_MOUSE1.419e-1443.42Rho-related GTP-binding protein RhoV OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionC21854 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSN-28R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21854 ID=C21854; Name=C21854; organism=Citrus sinensis; type=EST; length=282bp
GGCACGAGCATGTATGCTCATTTNTTACACAAGTAACAAGTTCCCCACTG
ATTACATACCCACAGTGTTTGATAATTTCAGTGCCAATNTTGCTGTTGAT
GGTAGTATTGTGAACCTGGGCTTATGGGATACTGCAGGGCAGGAAGATTA
TAGCAGGTTGAGGCCACTGAGTTACAGAGGTGCAGACATTTTTNTNCTGG
CTTTCTCATTAATTAGTAGGGCAAGTTATGAAACGTTCTTAAGAAGTGGA
TGCCTGAACTTCGACGNTTCGACCAATGTACC
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