C21854

Overview
NameC21854
Unique NameC21854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length282
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOV_HUMAN (Rho-related GTP-binding protein RhoV OS=Homo sapiens GN=RHOV PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.419e-14
Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            ++ +++ YT N +P  Y PT  D FS    VDG+ V + LWDTAGQED+ RLR L Y   D+F   FS++  +S++
Sbjct:   44 KSSLIVSYTCNGYPARYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDFDRLRSLCYPDTDVFLACFSVVQPSSFQ 119          

HSP 2 Score: 22.3274 bits (46), Expect = 1.419e-14
Identity = 6/11 (54.55%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  232 NVLKKWMPELR 264
            N+ +KW+PE+R
Sbjct:  120 NITEKWLPEIR 130          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHO1_ENTHI (Ras-like GTP-binding protein RHO1 OS=Entamoeba histolytica GN=RHO1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+L+ ++  + PT Y+PTVF+NFS           L LWDTAGQE+Y RLRPLSY  +D+  L F++ +R S++
Sbjct:   33 KTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILDLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFD 108          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHO4_SCHPO (GTP-binding protein rho4 OS=Schizosaccharomyces pombe GN=rho4 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 3.132e-14
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAV--DGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRAS 226
            + C+LI ++S  FP  Y+PTVF+N+  +     +  ++ L LWDTAGQE+Y RLRPLSY  +++  L FS+   AS
Sbjct:   27 KTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPAS 102          

HSP 2 Score: 22.3274 bits (46), Expect = 3.132e-14
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 1
Query:  202 FLIN**GKL*NVLKKWMPELRRF 270
            F I+    L NV +KW PE++ F
Sbjct:   95 FSIDCPASLNNVTEKWYPEVQHF 117          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOV_BOVIN (Rho-related GTP-binding protein RhoV OS=Bos taurus GN=Rhov PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.045e-14
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            ++ +++ YT N +P  Y PT  D FS    VDG+ V + LWDTAGQED  RLR L Y   D+F   FS++  +S++
Sbjct:   44 KSSLIVSYTCNGYPARYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDLDRLRSLCYPDTDVFLACFSVVQPSSFQ 119          

HSP 2 Score: 22.3274 bits (46), Expect = 4.045e-14
Identity = 6/11 (54.55%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  232 NVLKKWMPELR 264
            N+ +KW+PE+R
Sbjct:  120 NITEKWLPEIR 130          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHO2_YEAST (GTP-binding protein RHO2 OS=Saccharomyces cerevisiae GN=RHO2 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.209e-14
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSL 211
            +  +L  +T  KFP  Y PTVF+N+  +  VDG  V+L LWDTAGQE+Y RLRP SY  ADI  + F++
Sbjct:   20 KTSLLYVFTLGKFPEQYHPTVFENYVTDCRVDGIKVSLTLWDTAGQEEYERLRPFSYSKADIILIGFAV 88          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOC_EMENI (GTP-binding protein rhoC OS=Emericella nidulans GN=rhoC PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.377e-14
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAV--DGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYETFL 241
            + C+LI Y+   FP  Y+PTVF+N+         G  V L LWDTAGQE+Y RLRPLSY   D+  + F++   AS E  +
Sbjct:   82 KTCLLISYSQGYFPEKYVPTVFENYITQTLHRRSGKTVELALWDTAGQEEYDRLRPLSYPETDLLFVCFAIDCPASLENVM 162          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOF_BOVIN (Rho-related GTP-binding protein RhoF OS=Bos taurus GN=RHOF PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.559e-13
Identity = 31/79 (39.24%), Postives = 49/79 (62.03%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYETFL 241
            +  +L+ Y+   FP  Y P+VF+ ++A+  V    V L L+DTAGQEDY RLRPLSY+   +  + + +++  SY+  L
Sbjct:   36 KTSLLMVYSQGSFPEHYAPSVFEKYTASVTVGSKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVL 114          

HSP 2 Score: 21.9422 bits (45), Expect = 5.559e-13
Identity = 8/13 (61.54%), Postives = 9/13 (69.23%), Query Frame = 1
Query:  232 NVLKKWMPELRRF 270
            NVL KW PE+  F
Sbjct:  112 NVLIKWFPEVTHF 124          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOF_HUMAN (Rho-related GTP-binding protein RhoF OS=Homo sapiens GN=RHOF PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.563e-13
Identity = 31/79 (39.24%), Postives = 49/79 (62.03%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYETFL 241
            +  +L+ Y+   FP  Y P+VF+ ++A+  V    V L L+DTAGQEDY RLRPLSY+   +  + + +++  SY+  L
Sbjct:   32 KTSLLMVYSQGSFPEHYAPSVFEKYTASVTVGSKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVL 110          

HSP 2 Score: 21.9422 bits (45), Expect = 5.563e-13
Identity = 8/13 (61.54%), Postives = 9/13 (69.23%), Query Frame = 1
Query:  232 NVLKKWMPELRRF 270
            NVL KW PE+  F
Sbjct:  108 NVLIKWFPEVTHF 120          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOD_HUMAN (Rho-related GTP-binding protein RhoD OS=Homo sapiens GN=RHOD PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 7.938e-13
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            +  +L+ +    FP  Y PTVF+ +  N  V G  V+L +WDTAGQ+DY RLRPL Y  A +  L F + S  S++
Sbjct:   30 KTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFD 105          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOF_MOUSE (Rho-related GTP-binding protein RhoF OS=Mus musculus GN=Rhof PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 9.385e-13
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYETFL 241
            +  +L+ Y    FP  Y P+VF+ ++A+  V    V L L+DTAGQEDY RLRPLSY+   +  + + +++  SY+  L
Sbjct:   32 KTSLLMVYCQGSFPEHYAPSVFEKYTASVTVGNKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVL 110          

HSP 2 Score: 21.9422 bits (45), Expect = 9.385e-13
Identity = 8/13 (61.54%), Postives = 9/13 (69.23%), Query Frame = 1
Query:  232 NVLKKWMPELRRF 270
            NVL KW PE+  F
Sbjct:  108 NVLIKWFPEVTHF 120          
The following BLAST results are available for this feature:
BLAST of C21854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
RHOV_HUMAN1.419e-1443.42Rho-related GTP-binding protein RhoV OS=Homo sapie... [more]
RHO1_ENTHI1.447e-1444.74Ras-like GTP-binding protein RHO1 OS=Entamoeba his... [more]
RHO4_SCHPO3.132e-1444.74GTP-binding protein rho4 OS=Schizosaccharomyces po... [more]
RHOV_BOVIN4.045e-1443.42Rho-related GTP-binding protein RhoV OS=Bos taurus... [more]
RHO2_YEAST4.209e-1450.72GTP-binding protein RHO2 OS=Saccharomyces cerevisi... [more]
RHOC_EMENI9.377e-1444.44GTP-binding protein rhoC OS=Emericella nidulans GN... [more]
RHOF_BOVIN5.559e-1339.24Rho-related GTP-binding protein RhoF OS=Bos taurus... [more]
RHOF_HUMAN5.563e-1339.24Rho-related GTP-binding protein RhoF OS=Homo sapie... [more]
RHOD_HUMAN7.938e-1342.11Rho-related GTP-binding protein RhoD OS=Homo sapie... [more]
RHOF_MOUSE9.385e-1339.24Rho-related GTP-binding protein RhoF OS=Mus muscul... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21854 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSN-28R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21854 ID=C21854; Name=C21854; organism=Citrus sinensis; type=EST; length=282bp
GGCACGAGCATGTATGCTCATTTNTTACACAAGTAACAAGTTCCCCACTG
ATTACATACCCACAGTGTTTGATAATTTCAGTGCCAATNTTGCTGTTGAT
GGTAGTATTGTGAACCTGGGCTTATGGGATACTGCAGGGCAGGAAGATTA
TAGCAGGTTGAGGCCACTGAGTTACAGAGGTGCAGACATTTTTNTNCTGG
CTTTCTCATTAATTAGTAGGGCAAGTTATGAAACGTTCTTAAGAAGTGGA
TGCCTGAACTTCGACGNTTCGACCAATGTACC
back to top