C21854

Overview
NameC21854
Unique NameC21854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length282
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9695 contig Csv1_Contig9695:269..551. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOH_BOVIN (Rho-related GTP-binding protein RhoH OS=Bos taurus GN=RHOH PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.016e-12
Identity = 29/75 (38.67%), Postives = 49/75 (65.33%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASY 229
            +  +L+ +TS  FP  Y PTV++N   +  +DG  ++LGLWDTAG + +  +RPLSY+ AD+  + +S+ +  S+
Sbjct:   17 KTSLLVRFTSETFPEAYKPTVYENTGVDVLMDGIQISLGLWDTAGNDAFRSIRPLSYQQADVVLMCYSVANHNSF 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHO3_SCHPO (GTP-binding protein rho3 OS=Schizosaccharomyces pombe GN=rho3 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.016e-12
Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYETFL 241
            +  +L  +T   FP  Y PT+F+N+  +  VDG+ + L LWDTAGQE+Y +LR LSY    +  + F++ SR S E  +
Sbjct:   26 KTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVI 104          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOH_MOUSE (Rho-related GTP-binding protein RhoH OS=Mus musculus GN=Rhoh PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.940e-12
Identity = 29/75 (38.67%), Postives = 49/75 (65.33%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASY 229
            +  +L+ +TS  FP  Y PTV++N   +  +DG  ++LGLWDTAG + +  +RPLSY+ AD+  + +S+ +  S+
Sbjct:   17 KTSLLVRFTSETFPEAYKPTVYENTGVDVFMDGIQISLGLWDTAGNDAFRSIRPLSYQQADVVLMCYSVANHNSF 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOH_HUMAN (Rho-related GTP-binding protein RhoH OS=Homo sapiens GN=RHOH PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.940e-12
Identity = 29/75 (38.67%), Postives = 49/75 (65.33%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASY 229
            +  +L+ +TS  FP  Y PTV++N   +  +DG  ++LGLWDTAG + +  +RPLSY+ AD+  + +S+ +  S+
Sbjct:   17 KTSLLVRFTSETFPEAYKPTVYENTGVDVFMDGIQISLGLWDTAGNDAFRSIRPLSYQQADVVLMCYSVANHNSF 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOD_MOUSE (Rho-related GTP-binding protein RhoD OS=Mus musculus GN=Rhod PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.720e-12
Identity = 29/76 (38.16%), Postives = 47/76 (61.84%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            +  +++ +    FP  Y PTVF+ ++A   + G  V+L +WDTAGQ+DY RLRPL Y  A++  L F + +  S++
Sbjct:   30 KTSLMMVFAKGAFPESYSPTVFERYNATLQMKGKPVHLQIWDTAGQDDYDRLRPLFYPDANVLLLCFDVTNPNSFD 105          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHO3_YEAST (GTP-binding protein RHO3 OS=Saccharomyces cerevisiae GN=RHO3 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.497e-11
Identity = 34/76 (44.74%), Postives = 44/76 (57.89%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            +  +L  +T   FP  Y PTVF+N+  +  VD   + L LWDTAGQE++ RLR LSY       L FS+ SR S E
Sbjct:   29 KTSLLNVFTRGYFPEVYEPTVFENYIHDIFVDSKHITLSLWDTAGQEEFDRLRSLSYSDTQCIMLCFSIDSRDSLE 104          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHO3_ASHGO (GTP-binding protein RHO3 OS=Ashbya gossypii GN=RHO3 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.554e-11
Identity = 34/76 (44.74%), Postives = 44/76 (57.89%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            +  +L  +T   FP  Y PTVF+N+  +  VD   + L LWDTAGQE++ RLR LSY       L FS+ SR S E
Sbjct:   28 KTSLLNVFTRGYFPKVYEPTVFENYIHDIFVDNQHITLSLWDTAGQEEFDRLRSLSYSDTHTIMLCFSVDSRDSLE 103          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RACM_DICDI (Rho-related protein racM OS=Dictyostelium discoideum GN=racM PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.554e-11
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 2
Query:    5 RACMLIXYT-SNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASY 229
            +  +L+ YT S  FP +Y+PT  DNF     ++G   +L +WDTAG E Y  LRPL Y   DI  L F++ +R S+
Sbjct:   18 KTTLLMTYTASGSFPQEYVPTALDNFIHEATINGKKASLSIWDTAGGEYYHELRPLIYPETDILLLLFAIENRESF 93          
The following BLAST results are available for this feature:
BLAST of C21854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
RHOH_BOVIN3.016e-1238.67Rho-related GTP-binding protein RhoH OS=Bos taurus... [more]
RHO3_SCHPO3.016e-1240.51GTP-binding protein rho3 OS=Schizosaccharomyces po... [more]
RHOH_MOUSE3.940e-1238.67Rho-related GTP-binding protein RhoH OS=Mus muscul... [more]
RHOH_HUMAN3.940e-1238.67Rho-related GTP-binding protein RhoH OS=Homo sapie... [more]
RHOD_MOUSE6.720e-1238.16Rho-related GTP-binding protein RhoD OS=Mus muscul... [more]
RHO3_YEAST1.497e-1144.74GTP-binding protein RHO3 OS=Saccharomyces cerevisi... [more]
RHO3_ASHGO2.554e-1144.74GTP-binding protein RHO3 OS=Ashbya gossypii GN=RHO... [more]
RACM_DICDI2.554e-1142.11Rho-related protein racM OS=Dictyostelium discoide... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21854 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSN-28R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21854 ID=C21854; Name=C21854; organism=Citrus sinensis; type=EST; length=282bp
GGCACGAGCATGTATGCTCATTTNTTACACAAGTAACAAGTTCCCCACTG
ATTACATACCCACAGTGTTTGATAATTTCAGTGCCAATNTTGCTGTTGAT
GGTAGTATTGTGAACCTGGGCTTATGGGATACTGCAGGGCAGGAAGATTA
TAGCAGGTTGAGGCCACTGAGTTACAGAGGTGCAGACATTTTTNTNCTGG
CTTTCTCATTAATTAGTAGGGCAAGTTATGAAACGTTCTTAAGAAGTGGA
TGCCTGAACTTCGACGNTTCGACCAATGTACC
back to top