C21854 | Citrus Genome Database

Overview


Name	C21854
Unique Name	C21854
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	282

Libraries


Library Name	Type
Valencia orange young seeds cDNA	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9695	contig	Csv1_Contig9695:269..551.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC6_ARATH (Rac-like GTP-binding protein ARAC6 OS=Arabidopsis thaliana GN=ARAC6 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 5.987e-32
Identity = 61/76 (80.26%), Postives = 69/76 (90.79%), Query Frame = 2

Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YTSN FPTDY+PTVFDNFSAN  V+G+ VNLGLWDTAGQEDY+RLRPLSYRGAD+F LAFSLIS+ASYE
Sbjct:   19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 94

HSP 2 Score: 24.2534 bits (51), Expect = 5.987e-32
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1

Query:  232 NVLKKWMPELRRF 270
            NV KKW+PEL+ +
Sbjct:   95 NVSKKWIPELKHY 107

[Close]

BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC1_BETVU (Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.987e-32
Identity = 61/76 (80.26%), Postives = 69/76 (90.79%), Query Frame = 2

Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YTSN FPTDY+PTVFDNFSAN  V+G+ VNLGLWDTAGQEDY+RLRPLSYRGAD+F LAFSLIS+ASYE
Sbjct:   19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 94

HSP 2 Score: 24.2534 bits (51), Expect = 5.987e-32
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1

Query:  232 NVLKKWMPELRRF 270
            NV KKW+PEL+ +
Sbjct:   95 NVSKKWIPELKHY 107

[Close]

BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC1_ARATH (Rac-like GTP-binding protein ARAC1 OS=Arabidopsis thaliana GN=ARAC1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.987e-32
Identity = 61/76 (80.26%), Postives = 69/76 (90.79%), Query Frame = 2

Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YTSN FPTDY+PTVFDNFSAN  V+G+ VNLGLWDTAGQEDY+RLRPLSYRGAD+F LAFSLIS+ASYE
Sbjct:   19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 94

HSP 2 Score: 24.2534 bits (51), Expect = 5.987e-32
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1

Query:  232 NVLKKWMPELRRF 270
            NV KKW+PEL+ +
Sbjct:   95 NVSKKWIPELKHY 107

[Close]

BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC9_ARATH (Rac-like GTP-binding protein ARAC9 OS=Arabidopsis thaliana GN=ARAC9 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.239e-31
Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = 2

Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYETFLR 244
            + C+LI YTSN FPTDY+PTVFDNF+AN  VDG  VNLGLWDTAGQEDY+R+RPLSYRGAD+F LAFSLISR S+E   +
Sbjct:   31 KTCLLISYTSNTFPTDYVPTVFDNFNANVLVDGKTVNLGLWDTAGQEDYNRVRPLSYRGADVFILAFSLISRPSFENIAK 110

HSP 2 Score: 25.409 bits (54), Expect = 2.239e-31
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1

Query:  232 NVLKKWMPELRRF 270
            N+ KKW+PELR +
Sbjct:  107 NIAKKWVPELRHY 119

[Close]

BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC3_MOUSE (Ras-related C3 botulinum toxin substrate 3 OS=Mus musculus GN=Rac3 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.395e-25
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 2

Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+N FP +YIPTVFDN+SAN  VDG  VNLGLWDTAGQEDY RLRPLSY   D+F + FSL+S AS+E
Sbjct:   16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91

[Close]

BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC3_HUMAN (Ras-related C3 botulinum toxin substrate 3 OS=Homo sapiens GN=RAC3 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.395e-25
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 2

Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+N FP +YIPTVFDN+SAN  VDG  VNLGLWDTAGQEDY RLRPLSY   D+F + FSL+S AS+E
Sbjct:   16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91

[Close]

BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC1_RAT (Ras-related C3 botulinum toxin substrate 1 OS=Rattus norvegicus GN=Rac1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.395e-25
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 2

Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+N FP +YIPTVFDN+SAN  VDG  VNLGLWDTAGQEDY RLRPLSY   D+F + FSL+S AS+E
Sbjct:   16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91

[Close]

BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC1_MOUSE (Ras-related C3 botulinum toxin substrate 1 OS=Mus musculus GN=Rac1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.395e-25
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 2

Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+N FP +YIPTVFDN+SAN  VDG  VNLGLWDTAGQEDY RLRPLSY   D+F + FSL+S AS+E
Sbjct:   16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91

[Close]

BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC1_HUMAN (Ras-related C3 botulinum toxin substrate 1 OS=Homo sapiens GN=RAC1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.395e-25
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 2

Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+N FP +YIPTVFDN+SAN  VDG  VNLGLWDTAGQEDY RLRPLSY   D+F + FSL+S AS+E
Sbjct:   16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91

[Close]

BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC1_CANFA (Ras-related C3 botulinum toxin substrate 1 OS=Canis familiaris GN=RAC1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.395e-25
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 2

Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+N FP +YIPTVFDN+SAN  VDG  VNLGLWDTAGQEDY RLRPLSY   D+F + FSL+S AS+E
Sbjct:   16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91

The following BLAST results are available for this feature:

BLAST of C21854 vs. ExPASy Swiss-Prot

BLAST of C21854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138


Match Name	E-value	Identity	Description
RAC6_ARATH	5.987e-32	80.26	Rac-like GTP-binding protein ARAC6 OS=Arabidopsis ...	[more]
RAC1_BETVU	5.987e-32	80.26	Rac-like GTP-binding protein RHO1 OS=Beta vulgaris...	[more]
RAC1_ARATH	5.987e-32	80.26	Rac-like GTP-binding protein ARAC1 OS=Arabidopsis ...	[more]
RAC9_ARATH	2.239e-31	73.75	Rac-like GTP-binding protein ARAC9 OS=Arabidopsis ...	[more]
RAC3_MOUSE	1.395e-25	68.42	Ras-related C3 botulinum toxin substrate 3 OS=Mus ...	[more]
RAC3_HUMAN	1.395e-25	68.42	Ras-related C3 botulinum toxin substrate 3 OS=Homo...	[more]
RAC1_RAT	1.395e-25	68.42	Ras-related C3 botulinum toxin substrate 1 OS=Ratt...	[more]
RAC1_MOUSE	1.395e-25	68.42	Ras-related C3 botulinum toxin substrate 1 OS=Mus ...	[more]
RAC1_HUMAN	1.395e-25	68.42	Ras-related C3 botulinum toxin substrate 1 OS=Homo...	[more]
RAC1_CANFA	1.395e-25	68.42	Ras-related C3 botulinum toxin substrate 1 OS=Cani...	[more]

Pages

Properties


Property Name	Value
Genbank description	C21854 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSN-28R 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>C21854 ID=C21854; Name=C21854; organism=Citrus sinensis; type=EST; length=282bp
GGCACGAGCATGTATGCTCATTTNTTACACAAGTAACAAGTTCCCCACTG
ATTACATACCCACAGTGTTTGATAATTTCAGTGCCAATNTTGCTGTTGAT
GGTAGTATTGTGAACCTGGGCTTATGGGATACTGCAGGGCAGGAAGATTA
TAGCAGGTTGAGGCCACTGAGTTACAGAGGTGCAGACATTTTTNTNCTGG
CTTTCTCATTAATTAGTAGGGCAAGTTATGAAACGTTCTTAAGAAGTGGA
TGCCTGAACTTCGACGNTTCGACCAATGTACC