C21854

Overview
NameC21854
Unique NameC21854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length282
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC1_BOVIN (Ras-related C3 botulinum toxin substrate 1 OS=Bos taurus GN=RAC1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.395e-25
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+N FP +YIPTVFDN+SAN  VDG  VNLGLWDTAGQEDY RLRPLSY   D+F + FSL+S AS+E
Sbjct:   16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RACA_DICDI (Rho-related protein racA OS=Dictyostelium discoideum GN=racA PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.821e-25
Identity = 49/76 (64.47%), Postives = 62/76 (81.58%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            ++C+LI YT+N FP +Y+PTVFDN+SAN  +DG   NLGLWDTAGQEDY RLRPLSY   D+F + FS++SRAS+E
Sbjct:   16 KSCLLIAYTTNAFPGEYVPTVFDNYSANVMIDGKPFNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIVSRASFE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC1C_DICDI (Rho-related protein rac1C OS=Dictyostelium discoideum GN=rac1C PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.821e-25
Identity = 51/76 (67.11%), Postives = 61/76 (80.26%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+N FP +YIPTVFDN+SAN  VDG  +NLGLWDTAGQEDY RLRPLSY   D+F + FS+IS +SYE
Sbjct:   16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIISPSSYE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC2_MOUSE (Ras-related C3 botulinum toxin substrate 2 OS=Mus musculus GN=Rac2 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.379e-25
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+N FP +YIPTVFDN+SAN  VD   VNLGLWDTAGQEDY RLRPLSY   D+F + FSL+S ASYE
Sbjct:   16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC2_HUMAN (Ras-related C3 botulinum toxin substrate 2 OS=Homo sapiens GN=RAC2 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.379e-25
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+N FP +YIPTVFDN+SAN  VD   VNLGLWDTAGQEDY RLRPLSY   D+F + FSL+S ASYE
Sbjct:   16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC2_CAVPO (Ras-related C3 botulinum toxin substrate 2 OS=Cavia porcellus GN=RAC2 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.379e-25
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+N FP +YIPTVFDN+SAN  VD   VNLGLWDTAGQEDY RLRPLSY   D+F + FSL+S ASYE
Sbjct:   16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC2_BOVIN (Ras-related C3 botulinum toxin substrate 2 OS=Bos taurus GN=RAC2 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.379e-25
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+N FP +YIPTVFDN+SAN  VD   VNLGLWDTAGQEDY RLRPLSY   D+F + FSL+S ASYE
Sbjct:   16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC1B_DICDI (Rho-related protein rac1B OS=Dictyostelium discoideum GN=rac1B PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.107e-25
Identity = 50/76 (65.79%), Postives = 61/76 (80.26%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+N FP +YIPTVFDN+SAN  VDG  +NLGLWDTAGQEDY RLRPLSY   D+F + FS++S AS+E
Sbjct:   16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIVSPASFE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RACB_DICDI (Rho-related protein racB OS=Dictyostelium discoideum GN=racB PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.300e-25
Identity = 49/75 (65.33%), Postives = 60/75 (80.00%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASY 229
            + C+LI YTSN FPT+Y+PTVFDN+SAN  VD   V+LGLWDTAGQEDY RLRPLSY   D+F + F++IS+ SY
Sbjct:   16 KTCLLISYTSNSFPTEYVPTVFDNYSANVMVDNKTVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICFAIISQTSY 90          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC1A_DICDI (Rho-related protein rac1A OS=Dictyostelium discoideum GN=rac1A PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.300e-25
Identity = 50/76 (65.79%), Postives = 61/76 (80.26%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+N FP +YIPTVFDN+SAN  VDG  +NLGLWDTAGQEDY RLRPLSY   D+F + FS+IS +S+E
Sbjct:   16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIISPSSFE 91          
The following BLAST results are available for this feature:
BLAST of C21854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
RAC1_BOVIN1.395e-2568.42Ras-related C3 botulinum toxin substrate 1 OS=Bos ... [more]
RACA_DICDI1.821e-2564.47Rho-related protein racA OS=Dictyostelium discoide... [more]
RAC1C_DICDI1.821e-2567.11Rho-related protein rac1C OS=Dictyostelium discoid... [more]
RAC2_MOUSE2.379e-2568.42Ras-related C3 botulinum toxin substrate 2 OS=Mus ... [more]
RAC2_HUMAN2.379e-2568.42Ras-related C3 botulinum toxin substrate 2 OS=Homo... [more]
RAC2_CAVPO2.379e-2568.42Ras-related C3 botulinum toxin substrate 2 OS=Cavi... [more]
RAC2_BOVIN2.379e-2568.42Ras-related C3 botulinum toxin substrate 2 OS=Bos ... [more]
RAC1B_DICDI3.107e-2565.79Rho-related protein rac1B OS=Dictyostelium discoid... [more]
RACB_DICDI5.300e-2565.33Rho-related protein racB OS=Dictyostelium discoide... [more]
RAC1A_DICDI5.300e-2565.79Rho-related protein rac1A OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionC21854 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSN-28R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21854 ID=C21854; Name=C21854; organism=Citrus sinensis; type=EST; length=282bp
GGCACGAGCATGTATGCTCATTTNTTACACAAGTAACAAGTTCCCCACTG
ATTACATACCCACAGTGTTTGATAATTTCAGTGCCAATNTTGCTGTTGAT
GGTAGTATTGTGAACCTGGGCTTATGGGATACTGCAGGGCAGGAAGATTA
TAGCAGGTTGAGGCCACTGAGTTACAGAGGTGCAGACATTTTTNTNCTGG
CTTTCTCATTAATTAGTAGGGCAAGTTATGAAACGTTCTTAAGAAGTGGA
TGCCTGAACTTCGACGNTTCGACCAATGTACC
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