C21854

Overview
NameC21854
Unique NameC21854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length282
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9695 contig Csv1_Contig9695:269..551. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC2_DROME (Ras-related protein Rac2 OS=Drosophila melanogaster GN=Rac2 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.014e-24
Identity = 49/76 (64.47%), Postives = 60/76 (78.95%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+N FP +YIPTVFDN+SAN  VD   +NLGLWDTAGQEDY RLRPLSY   D+F + FSL++ AS+E
Sbjct:   16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC1_DROME (Ras-related protein Rac1 OS=Drosophila melanogaster GN=Rac1 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.014e-24
Identity = 49/76 (64.47%), Postives = 60/76 (78.95%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+N FP +YIPTVFDN+SAN  VD   +NLGLWDTAGQEDY RLRPLSY   D+F + FSL++ AS+E
Sbjct:   16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RACF1_DICDI (Rho-related protein racF1 OS=Dictyostelium discoideum GN=racF1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.653e-24
Identity = 48/76 (63.16%), Postives = 61/76 (80.26%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + CMLI YT+N FP++YIPTVFDN+ AN  ++G   +LGLWDTAGQEDY RLRPLSY   D+F + FS+IS+AS+E
Sbjct:   16 KTCMLISYTTNGFPSEYIPTVFDNYCANLMLEGKPYSLGLWDTAGQEDYDRLRPLSYPHTDVFLICFSIISQASFE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC1_CAEEL (Ras-related protein ced-10 OS=Caenorhabditis elegans GN=ced-10 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 7.653e-24
Identity = 49/76 (64.47%), Postives = 60/76 (78.95%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+N FP +YIPTVFDN+SAN  VDG  +NLGLWDTAGQEDY RLRPLSY   D+F + F+L + AS+E
Sbjct:   16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGRPINLGLWDTAGQEDYDRLRPLSYPQTDVFLVCFALNNPASFE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RACB_ENTHI (Rho-related protein racB (Fragment) OS=Entamoeba histolytica GN=RACB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.305e-23
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+L+ YT+N FPT+Y+PTVFDN+SA   VD   +NLGLWDTAGQEDY R+RPLSY   D+F L FS++S  S+E
Sbjct:    7 KTCLLVSYTTNAFPTEYVPTVFDNYSATVMVDSRPINLGLWDTAGQEDYDRIRPLSYPQTDVFLLCFSVVSPPSFE 82          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RECG_ENTHI (Rho-related protein racG OS=Entamoeba histolytica GN=RACG PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.227e-23
Identity = 47/76 (61.84%), Postives = 60/76 (78.95%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + CMLI YT+N FP +YIPTVF+N++++  VD   +NLGLWDTAGQEDY RLRPLSY   D+F + FS+I+ ASYE
Sbjct:   16 KTCMLISYTTNAFPNEYIPTVFENYNSSLVVDDVKINLGLWDTAGQEDYDRLRPLSYPSTDVFLVCFSVIAPASYE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RACF2_DICDI (Rho-related protein racF2 OS=Dictyostelium discoideum GN=racF2 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.908e-23
Identity = 46/76 (60.53%), Postives = 61/76 (80.26%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + CMLI YT+N FP++Y+PTVFDN+ AN  +DG   +LGLWDTAGQE+Y RLRPLSY   D+F + FS+IS++S+E
Sbjct:   16 KTCMLISYTTNGFPSEYLPTVFDNYCANLMLDGKPYSLGLWDTAGQEEYDRLRPLSYPQTDVFLICFSIISQSSFE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RACD_ENTHI (Rho-related protein racD (Fragment) OS=Entamoeba histolytica GN=RACD PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.044e-23
Identity = 47/75 (62.67%), Postives = 58/75 (77.33%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASY 229
            + C+LI YT+N+FP DY+PTVFDN+ A   VDG  +NLGLWDTAGQED  +LRPLSY   D+F L FS+ISR S+
Sbjct:   21 KTCLLICYTTNEFPKDYVPTVFDNYMAPMTVDGEPINLGLWDTAGQEDSEQLRPLSYPNTDLFLLCFSVISRTSF 95          

HSP 2 Score: 22.3274 bits (46), Expect = 3.044e-23
Identity = 5/14 (35.71%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  232 NVLKKWMPELRRFD 273
            N+  KW+PE++ ++
Sbjct:   97 NISSKWLPEIKHYE 110          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RACH_DICDI (Rho-related protein racH OS=Dictyostelium discoideum GN=racH PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.798e-23
Identity = 44/80 (55.00%), Postives = 62/80 (77.50%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYETFLR 244
            + C+LI YT+N FP +Y+PTVFDN++AN  V+ + +NLGLWDTAG E+Y+  RPLSY G D+F + FSLIS+ S+E  ++
Sbjct:   17 KTCLLISYTTNSFPGEYVPTVFDNYNANAIVNNTPINLGLWDTAGSEEYNSFRPLSYPGTDVFIICFSLISQTSFENVIK 96          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RACA_ENTHI (Rho-related protein racA OS=Entamoeba histolytica GN=RACA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.960e-23
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+N FP +YIPTVFDN+SA   VD   +NLGLWDTAGQEDY RLRPLSY   D+F + FS++S  S++
Sbjct:   16 KTCLLISYTTNAFPNEYIPTVFDNYSATVMVDSKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSVVSPPSFD 91          
The following BLAST results are available for this feature:
BLAST of C21854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
RAC2_DROME2.014e-2464.47Ras-related protein Rac2 OS=Drosophila melanogaste... [more]
RAC1_DROME2.014e-2464.47Ras-related protein Rac1 OS=Drosophila melanogaste... [more]
RACF1_DICDI7.653e-2463.16Rho-related protein racF1 OS=Dictyostelium discoid... [more]
RAC1_CAEEL7.653e-2464.47Ras-related protein ced-10 OS=Caenorhabditis elega... [more]
RACB_ENTHI1.305e-2360.53Rho-related protein racB (Fragment) OS=Entamoeba h... [more]
RECG_ENTHI2.227e-2361.84Rho-related protein racG OS=Entamoeba histolytica ... [more]
RACF2_DICDI2.908e-2360.53Rho-related protein racF2 OS=Dictyostelium discoid... [more]
RACD_ENTHI3.044e-2362.67Rho-related protein racD (Fragment) OS=Entamoeba h... [more]
RACH_DICDI3.798e-2355.00Rho-related protein racH OS=Dictyostelium discoide... [more]
RACA_ENTHI4.960e-2360.53Rho-related protein racA OS=Entamoeba histolytica ... [more]

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Properties
Property NameValue
Genbank descriptionC21854 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSN-28R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21854 ID=C21854; Name=C21854; organism=Citrus sinensis; type=EST; length=282bp
GGCACGAGCATGTATGCTCATTTNTTACACAAGTAACAAGTTCCCCACTG
ATTACATACCCACAGTGTTTGATAATTTCAGTGCCAATNTTGCTGTTGAT
GGTAGTATTGTGAACCTGGGCTTATGGGATACTGCAGGGCAGGAAGATTA
TAGCAGGTTGAGGCCACTGAGTTACAGAGGTGCAGACATTTTTNTNCTGG
CTTTCTCATTAATTAGTAGGGCAAGTTATGAAACGTTCTTAAGAAGTGGA
TGCCTGAACTTCGACGNTTCGACCAATGTACC
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