C21854

Overview
NameC21854
Unique NameC21854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length282
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOG_MOUSE (Rho-related GTP-binding protein RhoG OS=Mus musculus GN=Rhog PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.215e-22
Identity = 47/76 (61.84%), Postives = 57/76 (75.00%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+N FP +YIPTVFDN+SA  AVDG  VNL LWDTAGQE+Y RLR LSY   ++F + FS+ S  SYE
Sbjct:   16 KTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOG_HUMAN (Rho-related GTP-binding protein RhoG OS=Homo sapiens GN=RHOG PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.215e-22
Identity = 47/76 (61.84%), Postives = 57/76 (75.00%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+N FP +YIPTVFDN+SA  AVDG  VNL LWDTAGQE+Y RLR LSY   ++F + FS+ S  SYE
Sbjct:   16 KTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOG_CRICR (Rho-related GTP-binding protein RhoG OS=Cricetus cricetus GN=RHOG PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.215e-22
Identity = 47/76 (61.84%), Postives = 57/76 (75.00%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+N FP +YIPTVFDN+SA  AVDG  VNL LWDTAGQE+Y RLR LSY   ++F + FS+ S  SYE
Sbjct:   16 KTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOL_DROME (Ras-like GTP-binding protein RhoL OS=Drosophila melanogaster GN=RhoL PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.179e-22
Identity = 47/76 (61.84%), Postives = 55/76 (72.37%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + CMLI YT N+FP +YIPTVFDN + N AVD    NL LWDTAGQEDY RLRPLSY   + F L +S+ SR S+E
Sbjct:   24 KTCMLITYTRNEFPEEYIPTVFDNHACNIAVDDRDYNLTLWDTAGQEDYERLRPLSYPSTNCFLLCYSISSRTSFE 99          

HSP 2 Score: 23.0978 bits (48), Expect = 7.179e-22
Identity = 8/13 (61.54%), Postives = 9/13 (69.23%), Query Frame = 1
Query:  232 NVLKKWMPELRRF 270
            NV  KW PE+R F
Sbjct:  100 NVKSKWWPEIRHF 112          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: CDC42_COLGL (Cell division control protein 42 homolog OS=Colletotrichum gloeosporioides GN=CDC42 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.084e-21
Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYETFLRSG 250
            + C+LI YT+NKFP++Y+PTVFDN++    +      LGL+DTAGQEDY RLRPLSY   D+F + FS+ S AS+E   RSG
Sbjct:   18 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVARSG 99          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: CDC42_RAT (Cell division control protein 42 homolog OS=Rattus norvegicus GN=Cdc42 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 7.919e-21
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+NKFP++Y+PTVFDN++    + G    LGL+DTAGQEDY RLRPLSY   D+F + FS++S +S+E
Sbjct:   16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: CDC42_PIG (Cell division control protein 42 homolog OS=Sus scrofa GN=CDC42 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.919e-21
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+NKFP++Y+PTVFDN++    + G    LGL+DTAGQEDY RLRPLSY   D+F + FS++S +S+E
Sbjct:   16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: CDC42_MOUSE (Cell division control protein 42 homolog OS=Mus musculus GN=Cdc42 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.919e-21
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+NKFP++Y+PTVFDN++    + G    LGL+DTAGQEDY RLRPLSY   D+F + FS++S +S+E
Sbjct:   16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: CDC42_HUMAN (Cell division control protein 42 homolog OS=Homo sapiens GN=CDC42 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.919e-21
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+NKFP++Y+PTVFDN++    + G    LGL+DTAGQEDY RLRPLSY   D+F + FS++S +S+E
Sbjct:   16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: CDC42_DROPS (Cdc42 homolog OS=Drosophila pseudoobscura pseudoobscura GN=Cdc42 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.919e-21
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+NKFP++Y+PTVFDN++    + G    LGL+DTAGQEDY RLRPLSY   D+F + FS++S +S+E
Sbjct:   16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91          
The following BLAST results are available for this feature:
BLAST of C21854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
RHOG_MOUSE3.215e-2261.84Rho-related GTP-binding protein RhoG OS=Mus muscul... [more]
RHOG_HUMAN3.215e-2261.84Rho-related GTP-binding protein RhoG OS=Homo sapie... [more]
RHOG_CRICR3.215e-2261.84Rho-related GTP-binding protein RhoG OS=Cricetus c... [more]
RHOL_DROME7.179e-2261.84Ras-like GTP-binding protein RhoL OS=Drosophila me... [more]
CDC42_COLGL2.084e-2154.88Cell division control protein 42 homolog OS=Collet... [more]
CDC42_RAT7.919e-2155.26Cell division control protein 42 homolog OS=Rattus... [more]
CDC42_PIG7.919e-2155.26Cell division control protein 42 homolog OS=Sus sc... [more]
CDC42_MOUSE7.919e-2155.26Cell division control protein 42 homolog OS=Mus mu... [more]
CDC42_HUMAN7.919e-2155.26Cell division control protein 42 homolog OS=Homo s... [more]
CDC42_DROPS7.919e-2155.26Cdc42 homolog OS=Drosophila pseudoobscura pseudoob... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21854 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSN-28R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21854 ID=C21854; Name=C21854; organism=Citrus sinensis; type=EST; length=282bp
GGCACGAGCATGTATGCTCATTTNTTACACAAGTAACAAGTTCCCCACTG
ATTACATACCCACAGTGTTTGATAATTTCAGTGCCAATNTTGCTGTTGAT
GGTAGTATTGTGAACCTGGGCTTATGGGATACTGCAGGGCAGGAAGATTA
TAGCAGGTTGAGGCCACTGAGTTACAGAGGTGCAGACATTTTTNTNCTGG
CTTTCTCATTAATTAGTAGGGCAAGTTATGAAACGTTCTTAAGAAGTGGA
TGCCTGAACTTCGACGNTTCGACCAATGTACC
back to top