C21854

Overview
NameC21854
Unique NameC21854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length282
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9695 contig Csv1_Contig9695:269..551. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: CDC42_DROME (Cdc42 homolog OS=Drosophila melanogaster GN=Cdc42 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.919e-21
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+NKFP++Y+PTVFDN++    + G    LGL+DTAGQEDY RLRPLSY   D+F + FS++S +S+E
Sbjct:   16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: CDC42_CHICK (Cell division control protein 42 homolog OS=Gallus gallus GN=CDC42 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.919e-21
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+NKFP++Y+PTVFDN++    + G    LGL+DTAGQEDY RLRPLSY   D+F + FS++S +S+E
Sbjct:   16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: CDC42_CANFA (Cell division control protein 42 homolog OS=Canis familiaris GN=CDC42 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.919e-21
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+NKFP++Y+PTVFDN++    + G    LGL+DTAGQEDY RLRPLSY   D+F + FS++S +S+E
Sbjct:   16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: CDC42_CAEEL (Cell division control protein 42 homolog OS=Caenorhabditis elegans GN=cdc-42 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 7.919e-21
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+NKFP++Y+PTVFDN++    + G    LGL+DTAGQEDY RLRPLSY   D+F + FS+++ AS+E
Sbjct:   16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVAPASFE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: CDC42_BOVIN (Cell division control protein 42 homolog OS=Bos taurus GN=CDC42 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.919e-21
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+NKFP++Y+PTVFDN++    + G    LGL+DTAGQEDY RLRPLSY   D+F + FS++S +S+E
Sbjct:   16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: CDC42_ANOGA (Cdc42 homolog OS=Anopheles gambiae GN=Cdc42 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 7.919e-21
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+NKFP++Y+PTVFDN++    + G    LGL+DTAGQEDY RLRPLSY   D+F + FS++S +S+E
Sbjct:   16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: CDC42_AEDAE (Cdc42 homolog OS=Aedes aegypti GN=Cdc42 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.919e-21
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+NKFP++Y+PTVFDN++    + G    LGL+DTAGQEDY RLRPLSY   D+F + FS++S +S+E
Sbjct:   16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: CDC42_CANAL (Cell division control protein 42 homolog OS=Candida albicans GN=CDC42 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.764e-20
Identity = 43/76 (56.58%), Postives = 56/76 (73.68%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT++KFP DY+PTVFDN++    +      LGL+DTAGQEDY RLRPLSY   D+F + FS+IS AS+E
Sbjct:   16 KTCLLISYTTSKFPADYVPTVFDNYAVTVMIGDEPFTLGLFDTAGQEDYDRLRPLSYPSTDVFLVCFSVISPASFE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: CDC42_SCHPO (Cell division control protein 42 homolog OS=Schizosaccharomyces pombe GN=cdc42 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.304e-20
Identity = 43/76 (56.58%), Postives = 56/76 (73.68%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+NKFP+DY+PTVFDN++    +      LGL+DTAGQEDY RLRPLSY   D+F + FS+ S AS+E
Sbjct:   16 KTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: CDC42_MACFA (Cell division control protein 42 homolog OS=Macaca fascicularis GN=CDC42 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.009e-20
Identity = 41/76 (53.95%), Postives = 58/76 (76.32%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+NKFP++Y+PTVF+N++    + G    LGL+DTAGQEDY RLRPLSY   D+F + FS++S +S+E
Sbjct:   16 KTCLLISYTTNKFPSEYVPTVFNNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91          
The following BLAST results are available for this feature:
BLAST of C21854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
CDC42_DROME7.919e-2155.26Cdc42 homolog OS=Drosophila melanogaster GN=Cdc42 ... [more]
CDC42_CHICK7.919e-2155.26Cell division control protein 42 homolog OS=Gallus... [more]
CDC42_CANFA7.919e-2155.26Cell division control protein 42 homolog OS=Canis ... [more]
CDC42_CAEEL7.919e-2155.26Cell division control protein 42 homolog OS=Caenor... [more]
CDC42_BOVIN7.919e-2155.26Cell division control protein 42 homolog OS=Bos ta... [more]
CDC42_ANOGA7.919e-2155.26Cdc42 homolog OS=Anopheles gambiae GN=Cdc42 PE=2 S... [more]
CDC42_AEDAE7.919e-2155.26Cdc42 homolog OS=Aedes aegypti GN=Cdc42 PE=3 SV=1[more]
CDC42_CANAL1.764e-2056.58Cell division control protein 42 homolog OS=Candid... [more]
CDC42_SCHPO2.304e-2056.58Cell division control protein 42 homolog OS=Schizo... [more]
CDC42_MACFA3.009e-2053.95Cell division control protein 42 homolog OS=Macaca... [more]

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Properties
Property NameValue
Genbank descriptionC21854 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSN-28R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21854 ID=C21854; Name=C21854; organism=Citrus sinensis; type=EST; length=282bp
GGCACGAGCATGTATGCTCATTTNTTACACAAGTAACAAGTTCCCCACTG
ATTACATACCCACAGTGTTTGATAATTTCAGTGCCAATNTTGCTGTTGAT
GGTAGTATTGTGAACCTGGGCTTATGGGATACTGCAGGGCAGGAAGATTA
TAGCAGGTTGAGGCCACTGAGTTACAGAGGTGCAGACATTTTTNTNCTGG
CTTTCTCATTAATTAGTAGGGCAAGTTATGAAACGTTCTTAAGAAGTGGA
TGCCTGAACTTCGACGNTTCGACCAATGTACC
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