C21854

Overview
NameC21854
Unique NameC21854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length282
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9695 contig Csv1_Contig9695:269..551. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: CDC42_YEAST (Cell division control protein 42 OS=Saccharomyces cerevisiae GN=CDC42 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.133e-20
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+N+FP DY+PTVFDN++    +      LGL+DTAGQEDY RLRPLSY   D+F + FS+IS  S+E
Sbjct:   16 KTCLLISYTTNQFPADYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPSTDVFLVCFSVISPPSFE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RACE_DICDI (Rho-related protein racE OS=Dictyostelium discoideum GN=racE PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.704e-20
Identity = 42/76 (55.26%), Postives = 54/76 (71.05%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI Y  N FP DY+PTVF+N++A        + + LWDTAGQE+Y RLRPLSY GAD+  L FS IS++SYE
Sbjct:   24 KTCLLICYAQNDFPVDYVPTVFENYTATRKRGNEDIKVHLWDTAGQEEYDRLRPLSYPGADVVLLCFSTISQSSYE 99          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: CDC42_ASHGO (Cell division control protein 42 OS=Ashbya gossypii GN=CDC42 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.704e-20
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI YT+N+FP DY+PTVFDN++    +      LGL+DTAGQEDY RLRPLSY   D+F + FS++S  S+E
Sbjct:   16 KTCLLISYTTNQFPADYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPSTDVFLVCFSVVSPPSFE 91          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RACC_DICDI (Rho-related protein racC OS=Dictyostelium discoideum GN=racC PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.756e-20
Identity = 40/76 (52.63%), Postives = 54/76 (71.05%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI Y +N+FP DYIPTVFDN+  N       + LGLWDTAGQE+Y +LRPLSY  A++F + FS+ +  S+E
Sbjct:   19 KTCLLISYANNRFPEDYIPTVFDNYVVNLTAGDRNIELGLWDTAGQEEYDKLRPLSYANANVFLICFSITNPVSFE 94          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RACC_ENTHI (Rho-related protein racC OS=Entamoeba histolytica GN=RACC PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.548e-19
Identity = 41/79 (51.90%), Postives = 54/79 (68.35%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYETFL 241
            + C+LI YT+N+FP DYIPTVFDN+  +       + L LWDTAGQE+Y +LRPLSY  A IF + FS+ S  SY+  +
Sbjct:   20 KTCLLICYTTNEFPKDYIPTVFDNYVVSLTAGTRQIQLALWDTAGQEEYDQLRPLSYSSASIFLICFSVTSSVSYDNVI 98          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHO4_YEAST (GTP-binding protein RHO4 OS=Saccharomyces cerevisiae GN=RHO4 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.805e-18
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANX-AVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRAS 226
            + C+LI Y    FPTDYIPT+F+N+  N    +G I+ L LWDTAGQE+YSRLRPLSY  AD+  + +S+ S+ S
Sbjct:   85 KTCLLISYVQGTFPTDYIPTIFENYVTNIEGPNGQIIELALWDTAGQEEYSRLRPLSYTNADVLMVCYSVGSKTS 159          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHO_APLCA (Ras-like GTP-binding protein RHO OS=Aplysia californica GN=RHO PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.471e-18
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI ++ ++FP  Y+PTVF+N+ A+  VDG  V L LWDTAGQEDY RLRPLSY   D+  + FS+ S  S E
Sbjct:   18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93          

HSP 2 Score: 22.3274 bits (46), Expect = 5.471e-18
Identity = 7/13 (53.85%), Postives = 10/13 (76.92%), Query Frame = 1
Query:  232 NVLKKWMPELRRF 270
            N+ +KW PE+R F
Sbjct:   94 NIPEKWTPEVRHF 106          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHO1_CAEEL (Ras-like GTP-binding protein rhoA OS=Caenorhabditis elegans GN=rho-1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.471e-18
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI ++ ++FP  Y+PTVF+N+ A+  VDG  V L LWDTAGQEDY RLRPLSY   D+  + FS+ S  S E
Sbjct:   18 KTCLLIVFSKDQFPDVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93          

HSP 2 Score: 22.3274 bits (46), Expect = 5.471e-18
Identity = 7/13 (53.85%), Postives = 10/13 (76.92%), Query Frame = 1
Query:  232 NVLKKWMPELRRF 270
            N+ +KW PE+R F
Sbjct:   94 NIPEKWTPEVRHF 106          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RACD_DICDI (Rho-related protein racD OS=Dictyostelium discoideum GN=racD PE=2 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 6.275e-18
Identity = 40/76 (52.63%), Postives = 51/76 (67.11%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            +  +LI YT+  FP DY+PTVFDNF+     D   VNL LWDTAGQEDY  LRPLSY   D+F + +S++ R S +
Sbjct:   21 KTSLLILYTTKAFPKDYVPTVFDNFNCLEMYDNKPVNLVLWDTAGQEDYDNLRPLSYPQTDVFIICYSVVKRDSLD 96          
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOU_MOUSE (Rho-related GTP-binding protein RhoU OS=Mus musculus GN=Rhou PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.041e-18
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = 2
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            +  +++ YT+N +PT+YIPT FDNFSA  +VDG  V L L DTAGQ+++ +LRPL Y   DIF L FS++S  S++
Sbjct:   65 KTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPTSFQ 140          

HSP 2 Score: 23.0978 bits (48), Expect = 7.041e-18
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  232 NVLKKWMPELRR 267
            NV +KW+PE+RR
Sbjct:  141 NVGEKWVPEIRR 152          
The following BLAST results are available for this feature:
BLAST of C21854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
CDC42_YEAST5.133e-2055.26Cell division control protein 42 OS=Saccharomyces ... [more]
RACE_DICDI6.704e-2055.26Rho-related protein racE OS=Dictyostelium discoide... [more]
CDC42_ASHGO6.704e-2053.95Cell division control protein 42 OS=Ashbya gossypi... [more]
RACC_DICDI8.756e-2052.63Rho-related protein racC OS=Dictyostelium discoide... [more]
RACC_ENTHI2.548e-1951.90Rho-related protein racC OS=Entamoeba histolytica ... [more]
RHO4_YEAST4.805e-1853.33GTP-binding protein RHO4 OS=Saccharomyces cerevisi... [more]
RHO_APLCA5.471e-1852.63Ras-like GTP-binding protein RHO OS=Aplysia califo... [more]
RHO1_CAEEL5.471e-1852.63Ras-like GTP-binding protein rhoA OS=Caenorhabditi... [more]
RACD_DICDI6.275e-1852.63Rho-related protein racD OS=Dictyostelium discoide... [more]
RHOU_MOUSE7.041e-1851.32Rho-related GTP-binding protein RhoU OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionC21854 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSN-28R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21854 ID=C21854; Name=C21854; organism=Citrus sinensis; type=EST; length=282bp
GGCACGAGCATGTATGCTCATTTNTTACACAAGTAACAAGTTCCCCACTG
ATTACATACCCACAGTGTTTGATAATTTCAGTGCCAATNTTGCTGTTGAT
GGTAGTATTGTGAACCTGGGCTTATGGGATACTGCAGGGCAGGAAGATTA
TAGCAGGTTGAGGCCACTGAGTTACAGAGGTGCAGACATTTTTNTNCTGG
CTTTCTCATTAATTAGTAGGGCAAGTTATGAAACGTTCTTAAGAAGTGGA
TGCCTGAACTTCGACGNTTCGACCAATGTACC
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