C21854

Overview
NameC21854
Unique NameC21854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length282
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9695 contig Csv1_Contig9695:269..551. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHO_DISOM (Ras-like GTP-binding protein O-RHO OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.195e-18
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI ++ ++FP  Y+PTVF+N+ A+  VDG  V L LWDTAGQEDY RLRPLSY   D+  + FS+ S  S E
Sbjct:   18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOC_PONAB (Rho-related GTP-binding protein RhoC OS=Pongo abelii GN=RHOC PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.195e-18
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI ++ ++FP  Y+PTVF+N+ A+  VDG  V L LWDTAGQEDY RLRPLSY   D+  + FS+ S  S E
Sbjct:   18 KTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOC_MOUSE (Rho-related GTP-binding protein RhoC OS=Mus musculus GN=Rhoc PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.195e-18
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI ++ ++FP  Y+PTVF+N+ A+  VDG  V L LWDTAGQEDY RLRPLSY   D+  + FS+ S  S E
Sbjct:   18 KTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOC_HUMAN (Rho-related GTP-binding protein RhoC OS=Homo sapiens GN=RHOC PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.195e-18
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI ++ ++FP  Y+PTVF+N+ A+  VDG  V L LWDTAGQEDY RLRPLSY   D+  + FS+ S  S E
Sbjct:   18 KTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOC_CHICK (Rho-related GTP-binding protein RhoC OS=Gallus gallus GN=RHOC PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.195e-18
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI ++ ++FP  Y+PTVF+N+ A+  VDG  V L LWDTAGQEDY RLRPLSY   D+  + FS+ S  S E
Sbjct:   18 KTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOC_BOVIN (Rho-related GTP-binding protein RhoC OS=Bos taurus GN=RHOC PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.195e-18
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI ++ ++FP  Y+PTVF+N+ A+  VDG  V L LWDTAGQEDY RLRPLSY   D+  + FS+ S  S E
Sbjct:   18 KTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOA_RAT (Transforming protein RhoA OS=Rattus norvegicus GN=Rhoa PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.195e-18
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI ++ ++FP  Y+PTVF+N+ A+  VDG  V L LWDTAGQEDY RLRPLSY   D+  + FS+ S  S E
Sbjct:   18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOA_PONAB (Transforming protein RhoA OS=Pongo abelii GN=RHOA PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.195e-18
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI ++ ++FP  Y+PTVF+N+ A+  VDG  V L LWDTAGQEDY RLRPLSY   D+  + FS+ S  S E
Sbjct:   18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOA_MOUSE (Transforming protein RhoA OS=Mus musculus GN=Rhoa PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.195e-18
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI ++ ++FP  Y+PTVF+N+ A+  VDG  V L LWDTAGQEDY RLRPLSY   D+  + FS+ S  S E
Sbjct:   18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RHOA_HUMAN (Transforming protein RhoA OS=Homo sapiens GN=RHOA PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.195e-18
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + C+LI ++ ++FP  Y+PTVF+N+ A+  VDG  V L LWDTAGQEDY RLRPLSY   D+  + FS+ S  S E
Sbjct:   18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
The following BLAST results are available for this feature:
BLAST of C21854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
RHO_DISOM8.195e-1852.63Ras-like GTP-binding protein O-RHO OS=Discopyge om... [more]
RHOC_PONAB8.195e-1852.63Rho-related GTP-binding protein RhoC OS=Pongo abel... [more]
RHOC_MOUSE8.195e-1852.63Rho-related GTP-binding protein RhoC OS=Mus muscul... [more]
RHOC_HUMAN8.195e-1852.63Rho-related GTP-binding protein RhoC OS=Homo sapie... [more]
RHOC_CHICK8.195e-1852.63Rho-related GTP-binding protein RhoC OS=Gallus gal... [more]
RHOC_BOVIN8.195e-1852.63Rho-related GTP-binding protein RhoC OS=Bos taurus... [more]
RHOA_RAT8.195e-1852.63Transforming protein RhoA OS=Rattus norvegicus GN=... [more]
RHOA_PONAB8.195e-1852.63Transforming protein RhoA OS=Pongo abelii GN=RHOA ... [more]
RHOA_MOUSE8.195e-1852.63Transforming protein RhoA OS=Mus musculus GN=Rhoa ... [more]
RHOA_HUMAN8.195e-1852.63Transforming protein RhoA OS=Homo sapiens GN=RHOA ... [more]

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Properties
Property NameValue
Genbank descriptionC21854 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSN-28R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21854 ID=C21854; Name=C21854; organism=Citrus sinensis; type=EST; length=282bp
GGCACGAGCATGTATGCTCATTTNTTACACAAGTAACAAGTTCCCCACTG
ATTACATACCCACAGTGTTTGATAATTTCAGTGCCAATNTTGCTGTTGAT
GGTAGTATTGTGAACCTGGGCTTATGGGATACTGCAGGGCAGGAAGATTA
TAGCAGGTTGAGGCCACTGAGTTACAGAGGTGCAGACATTTTTNTNCTGG
CTTTCTCATTAATTAGTAGGGCAAGTTATGAAACGTTCTTAAGAAGTGGA
TGCCTGAACTTCGACGNTTCGACCAATGTACC
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