C21855

Overview
NameC21855
Unique NameC21855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 1433_TRIHA (14-3-3 protein homolog OS=Trichoderma harzianum PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.288e-12
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 3
Query:   60 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            E  VYLAKLAEQAERYEEMV+ M  + +      +LTVEERNLLSVAYKNVIG+ RA
Sbjct:    4 EDAVYLAKLAEQAERYEEMVENMKIVASEDR---DLTVEERNLLSVAYKNVIGARRA 57          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 1433E_SHEEP (14-3-3 protein epsilon OS=Ovis aries GN=YWHAE PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.288e-12
Identity = 39/58 (67.24%), Postives = 43/58 (74.14%), Query Frame = 3
Query:   57 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            RE  VY AKLAEQAERY+EMV+ M  +        ELTVEERNLLSVAYKNVIG+ RA
Sbjct:    4 REDLVYQAKLAEQAERYDEMVESMKKVAGMDV---ELTVEERNLLSVAYKNVIGARRA 58          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 1433E_RAT (14-3-3 protein epsilon OS=Rattus norvegicus GN=Ywhae PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.288e-12
Identity = 39/58 (67.24%), Postives = 43/58 (74.14%), Query Frame = 3
Query:   57 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            RE  VY AKLAEQAERY+EMV+ M  +        ELTVEERNLLSVAYKNVIG+ RA
Sbjct:    4 REDLVYQAKLAEQAERYDEMVESMKKVAGMDV---ELTVEERNLLSVAYKNVIGARRA 58          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 1433E_MOUSE (14-3-3 protein epsilon OS=Mus musculus GN=Ywhae PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.288e-12
Identity = 39/58 (67.24%), Postives = 43/58 (74.14%), Query Frame = 3
Query:   57 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            RE  VY AKLAEQAERY+EMV+ M  +        ELTVEERNLLSVAYKNVIG+ RA
Sbjct:    4 REDLVYQAKLAEQAERYDEMVESMKKVAGMDV---ELTVEERNLLSVAYKNVIGARRA 58          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 1433E_HUMAN (14-3-3 protein epsilon OS=Homo sapiens GN=YWHAE PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.288e-12
Identity = 39/58 (67.24%), Postives = 43/58 (74.14%), Query Frame = 3
Query:   57 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            RE  VY AKLAEQAERY+EMV+ M  +        ELTVEERNLLSVAYKNVIG+ RA
Sbjct:    4 REDLVYQAKLAEQAERYDEMVESMKKVAGMDV---ELTVEERNLLSVAYKNVIGARRA 58          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 1433E_CHICK (14-3-3 protein epsilon OS=Gallus gallus GN=YWHAE PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.288e-12
Identity = 39/58 (67.24%), Postives = 43/58 (74.14%), Query Frame = 3
Query:   57 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            RE  VY AKLAEQAERY+EMV+ M  +        ELTVEERNLLSVAYKNVIG+ RA
Sbjct:    4 REDLVYQAKLAEQAERYDEMVESMKKVAGMDV---ELTVEERNLLSVAYKNVIGARRA 58          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 1433E_BOVIN (14-3-3 protein epsilon OS=Bos taurus GN=YWHAE PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.288e-12
Identity = 39/58 (67.24%), Postives = 43/58 (74.14%), Query Frame = 3
Query:   57 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            RE  VY AKLAEQAERY+EMV+ M  +        ELTVEERNLLSVAYKNVIG+ RA
Sbjct:    4 REDLVYQAKLAEQAERYDEMVESMKKVAGMDV---ELTVEERNLLSVAYKNVIGARRA 58          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 14337_SOLLC (14-3-3 protein 7 OS=Solanum lycopersicum GN=TFT7 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.288e-12
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3
Query:   57 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            RE+ VYLA+LAEQAERY+EMV+ M ++        ELTVEERNL+SV YKNVIG+ RA
Sbjct:    5 REKQVYLARLAEQAERYDEMVEAMKAIAKMDV---ELTVEERNLVSVGYKNVIGARRA 59          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 1433_TOBAC (14-3-3-like protein OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.906e-12
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3
Query:   57 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            RE+ VYLA+LAEQAERY+EMV+ M ++        ELTVEERNL+SV YKNVIG+ RA
Sbjct:    5 REKQVYLARLAEQAERYDEMVEAMKTVAKMDV---ELTVEERNLVSVGYKNVIGARRA 59          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 14338_SOLLC (14-3-3 protein 8 OS=Solanum lycopersicum GN=TFT8 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.906e-12
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 3
Query:   57 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            RE  VY+A+LAEQAERY+EMV  M ++        ELTVEERNLLSV YKNV+GS RA
Sbjct:    7 RESLVYIARLAEQAERYDEMVDAMKNVANLDV---ELTVEERNLLSVGYKNVVGSRRA 61          
The following BLAST results are available for this feature:
BLAST of C21855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
1433_TRIHA5.288e-1268.4214-3-3 protein homolog OS=Trichoderma harzianum PE... [more]
1433E_SHEEP5.288e-1267.2414-3-3 protein epsilon OS=Ovis aries GN=YWHAE PE=1... [more]
1433E_RAT5.288e-1267.2414-3-3 protein epsilon OS=Rattus norvegicus GN=Ywh... [more]
1433E_MOUSE5.288e-1267.2414-3-3 protein epsilon OS=Mus musculus GN=Ywhae PE... [more]
1433E_HUMAN5.288e-1267.2414-3-3 protein epsilon OS=Homo sapiens GN=YWHAE PE... [more]
1433E_CHICK5.288e-1267.2414-3-3 protein epsilon OS=Gallus gallus GN=YWHAE P... [more]
1433E_BOVIN5.288e-1267.2414-3-3 protein epsilon OS=Bos taurus GN=YWHAE PE=2... [more]
14337_SOLLC5.288e-1263.7914-3-3 protein 7 OS=Solanum lycopersicum GN=TFT7 P... [more]
1433_TOBAC6.906e-1263.7914-3-3-like protein OS=Nicotiana tabacum PE=2 SV=1[more]
14338_SOLLC6.906e-1263.7914-3-3 protein 8 OS=Solanum lycopersicum GN=TFT8 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21855 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSG-33R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21855 ID=C21855; Name=C21855; organism=Citrus sinensis; type=EST; length=259bp
GGCACGANTCCAGTTAACTTTACAGTTTCTGCAATTNTGCTATGGGAACC
CCGACGAGAGAGCAATACGTTTACCTGGCGAAACTCGCCGAGCAAGCNGA
GCGCTATGAAGAGATGGTTAAGTTCATGGACAGCCTCGTCACTTCCTCCA
CTCCGGCGACTGAACTCACCGTCGAGGAGCGCAACCTCCTCTCCGTTGCT
TACAAGAACGTCATCGGCTCTNTTCGCGCCGGTGGNGTATTATCTCCTCT
ATCGAGCAG
back to top