C21855

Overview
NameC21855
Unique NameC21855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9307 contig Csv1_Contig9307:31..290. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 1433_FUCVE (14-3-3-like protein OS=Fucus vesiculosus PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.178e-11
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            +R+  VY+AKLAEQAER++EMV  M ++        EL+VEERNLLSVAYKNVIGS RA
Sbjct:    3 SRDDLVYMAKLAEQAERFDEMVDHMKAVAQQPK---ELSVEERNLLSVAYKNVIGSRRA 58          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 14331_ENTHI (14-3-3 protein 1 OS=Entamoeba histolytica PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.624e-11
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            +RE  VY AKLAEQ+ERY+EMV+ M  +        EL++EERNLLSVAYKNVIG+ RA
Sbjct:    3 SREDCVYTAKLAEQSERYDEMVQCMKQVAEMEA---ELSIEERNLLSVAYKNVIGAKRA 58          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 14310_ARATH (14-3-3-like protein GF14 epsilon OS=Arabidopsis thaliana GN=GRF10 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.427e-11
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 3
Query:   57 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            RE+ VYLAKL+EQ ERY+EMV+ M  +        ELTVEERNL+SV YKNVIG+ RA
Sbjct:    5 REKQVYLAKLSEQTERYDEMVEAMKKVAQLDV---ELTVEERNLVSVGYKNVIGARRA 59          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 14311_ARATH (14-3-3-like protein GF14 omicron OS=Arabidopsis thaliana GN=GRF11 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.846e-11
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 3
Query:   57 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            R + VYLAKL EQAERY+EMV+ M  +        ELT+EERNLLSV YKNVIG+ RA
Sbjct:    5 RAKQVYLAKLNEQAERYDEMVEAMKKVAALDV---ELTIEERNLLSVGYKNVIGARRA 59          
The following BLAST results are available for this feature:
BLAST of C21855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
1433_FUCVE1.178e-1162.7114-3-3-like protein OS=Fucus vesiculosus PE=2 SV=1[more]
14331_ENTHI2.624e-1161.0214-3-3 protein 1 OS=Entamoeba histolytica PE=3 SV=... [more]
14310_ARATH3.427e-1162.0714-3-3-like protein GF14 epsilon OS=Arabidopsis th... [more]
14311_ARATH5.846e-1162.0714-3-3-like protein GF14 omicron OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionC21855 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSG-33R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21855 ID=C21855; Name=C21855; organism=Citrus sinensis; type=EST; length=259bp
GGCACGANTCCAGTTAACTTTACAGTTTCTGCAATTNTGCTATGGGAACC
CCGACGAGAGAGCAATACGTTTACCTGGCGAAACTCGCCGAGCAAGCNGA
GCGCTATGAAGAGATGGTTAAGTTCATGGACAGCCTCGTCACTTCCTCCA
CTCCGGCGACTGAACTCACCGTCGAGGAGCGCAACCTCCTCTCCGTTGCT
TACAAGAACGTCATCGGCTCTNTTCGCGCCGGTGGNGTATTATCTCCTCT
ATCGAGCAG
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