C21866

Overview
NameC21866
Unique NameC21866
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length254
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21866 vs. ExPASy Swiss-Prot
Match: TCTP_SOLLC (Translationally-controlled tumor protein homolog OS=Solanum lycopersicum GN=TCTP PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.933e-27
Identity = 57/79 (72.15%), Postives = 62/79 (78.48%), Query Frame = 2
Query:   11 YMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFXGESMHDDGCXVFXYYKEGATDPTFXYIADALKEVKC 247
            +MKR+IK LTPKL  E QE FKKNIE ATKFLL K+ DLQFF GESMHDDG  VF YYKEG+ DP F YIA  LKE+KC
Sbjct:   90 FMKRYIKNLTPKLEGETQEAFKKNIEAATKFLLQKIKDLQFFVGESMHDDGALVFAYYKEGSADPPFLYIAPGLKEIKC 168          
BLAST of C21866 vs. ExPASy Swiss-Prot
Match: TCTP_ORYSJ (Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica GN=TCTP PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.307e-27
Identity = 57/79 (72.15%), Postives = 64/79 (81.01%), Query Frame = 2
Query:   11 YMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFXGESMHDDGCXVFXYYKEGATDPTFXYIADALKEVKC 247
            +MKR+IK L+ KL  E+QE FKKNIEGATK+LL KL DLQFF GESMHDDG  VF YYK+GATDPTF Y +  LKEVKC
Sbjct:   90 FMKRYIKNLSAKLDAEKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYKDGATDPTFLYFSHGLKEVKC 168          
BLAST of C21866 vs. ExPASy Swiss-Prot
Match: TCTP_FRAAN (Translationally-controlled tumor protein homolog OS=Fragaria ananassa GN=TCTP PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.307e-27
Identity = 60/79 (75.95%), Postives = 64/79 (81.01%), Query Frame = 2
Query:   11 YMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFXGESMHDDGCXVFXYYKEGATDPTFXYIADALKEVKC 247
            ++KR+IKLLTPKL  E+QE FKKNIEGATKFLLSKLSDLQFF GESM DD   VF  YKEGATDP F Y A  LKEVKC
Sbjct:   92 WVKRYIKLLTPKLEGEQQETFKKNIEGATKFLLSKLSDLQFFVGESMGDDTSLVFASYKEGATDPIFIYFAHGLKEVKC 170          
BLAST of C21866 vs. ExPASy Swiss-Prot
Match: TCTP_SOLTU (Translationally-controlled tumor protein homolog OS=Solanum tuberosum GN=TCTP PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.253e-26
Identity = 55/79 (69.62%), Postives = 61/79 (77.22%), Query Frame = 2
Query:   11 YMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFXGESMHDDGCXVFXYYKEGATDPTFXYIADALKEVKC 247
            Y+KR+IK LTPKL  E QE FKKNIE ATKFLLSKL D QFF GE MHDD   VF YYK+G+ DPTF Y+A  LKE+KC
Sbjct:   90 YIKRYIKNLTPKLEGEAQEAFKKNIESATKFLLSKLKDFQFFVGEGMHDDSALVFAYYKDGSADPTFLYLAPGLKEIKC 168          
BLAST of C21866 vs. ExPASy Swiss-Prot
Match: TCTP_HORVU (Translationally-controlled tumor protein homolog OS=Hordeum vulgare GN=TCTP PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.138e-26
Identity = 56/80 (70.00%), Postives = 62/80 (77.50%), Query Frame = 2
Query:    8 AYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFXGESMHDDGCXVFXYYKEGATDPTFXYIADALKEVKC 247
            AY+KR+IK LT KL  E  + FKKN+E ATK+LLSKL DLQFF GESMHDDG  VF YY+EGA DPTF Y A  LKEVKC
Sbjct:   89 AYIKRYIKNLTAKLEGEELDAFKKNVESATKYLLSKLKDLQFFVGESMHDDGSVVFAYYREGAADPTFLYFAHGLKEVKC 168          
BLAST of C21866 vs. ExPASy Swiss-Prot
Match: TCTP_WHEAT (Translationally-controlled tumor protein homolog OS=Triticum aestivum GN=TCTP PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.810e-25
Identity = 54/80 (67.50%), Postives = 63/80 (78.75%), Query Frame = 2
Query:    8 AYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFXGESMHDDGCXVFXYYKEGATDPTFXYIADALKEVKC 247
            ++MKR+IK L+ KL  +  ++FKKN+E ATK+LLSKL DLQFF GESMHDDG  VF YYKEGA DPTF Y A  LKEVKC
Sbjct:   89 SHMKRYIKNLSAKLEGDDLDVFKKNVESATKYLLSKLKDLQFFVGESMHDDGGVVFAYYKEGAADPTFLYFAHGLKEVKC 168          
BLAST of C21866 vs. ExPASy Swiss-Prot
Match: TCTP_CUCME (Translationally-controlled tumor protein homolog OS=Cucumis melo GN=TCTP PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.821e-24
Identity = 53/78 (67.95%), Postives = 59/78 (75.64%), Query Frame = 2
Query:   14 MKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFXGESMHDDGCXVFXYYKEGATDPTFXYIADALKEVKC 247
            +K++IK LTP L  E+QE FK  IEGA K+LL K+ DLQFF GESM DD   VF YYKEGATDPTF YIA  LKEVKC
Sbjct:   91 IKKYIKKLTPLLQGEQQEAFKNKIEGAVKYLLPKVKDLQFFVGESMADDSAMVFAYYKEGATDPTFLYIAPGLKEVKC 168          
BLAST of C21866 vs. ExPASy Swiss-Prot
Match: TCTP_MAIZE (Translationally-controlled tumor protein homolog OS=Zea mays GN=TCTP PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.116e-22
Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = 2
Query:    8 AYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFXGESMHDDGCXVFXYYKEGATDPTFXYIADALKEVKC 247
            +Y+K++IK LT  L  E+ + FKK +EGATKFLLSKL DLQFF GESM DD    F YYK+GAT+ TF Y +  LKE+KC
Sbjct:   88 SYIKKYIKNLTAVLEPEKADEFKKGVEGATKFLLSKLKDLQFFVGESMKDDASVAFAYYKDGATNSTFLYFSHGLKEIKC 167          
The following BLAST results are available for this feature:
BLAST of C21866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
TCTP_SOLLC1.933e-2772.15Translationally-controlled tumor protein homolog O... [more]
TCTP_ORYSJ4.307e-2772.15Translationally-controlled tumor protein homolog O... [more]
TCTP_FRAAN4.307e-2775.95Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLTU1.253e-2669.62Translationally-controlled tumor protein homolog O... [more]
TCTP_HORVU2.138e-2670.00Translationally-controlled tumor protein homolog O... [more]
TCTP_WHEAT1.810e-2567.50Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCME5.821e-2467.95Translationally-controlled tumor protein homolog O... [more]
TCTP_MAIZE7.116e-2260.00Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionC21866 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSN-12R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21866 ID=C21866; Name=C21866; organism=Citrus sinensis; type=EST; length=254bp
GGCACGAGCATACATGAAGAGATTCATCAAGTTGCTGACGCCCAAGCTGA
GTGAGGAGAGGCAGGAGATATTTAAGAAGAATATTGAGGGAGCGACCAAG
TTCTTGCTCTCGAAGCTCAGTGACCTTCAATTCTTTNTTGGGGAGAGCAT
GCATGATGATGGCTGTNTTGTCTTTNCTTACTACAAGGAAGGTGCGACCG
ACCCAACATTTTTNTATATTGCTGATGCATTGAAGGAGGTGAAGTGCTAA
GCCG
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