C21903

Overview
NameC21903
Unique NameC21903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length216
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 14335_ORYSJ (14-3-3-like protein GF14-E OS=Oryza sativa subsp. japonica GN=GF14E PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.931e-12
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            +RE+ VY+AKLAEQAERYEEMV FM+  V     + ELTVEERNLLSVA KNVI
Sbjct:    8 SREENVYMAKLAEQAERYEEMVEFMEK-VAKTVDSEELTVEERNLLSVAYKNVI 60          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 14334_ORYSJ (14-3-3-like protein GF14-D OS=Oryza sativa subsp. japonica GN=GF14D PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.931e-12
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 3
Query:   51 PTREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPAT---ELTVEERNLLSVAXKNVI 215
            PTRE+ VY AKLAEQAERYEEMV +M+ +  +   A+   ELTVEERNLLSVA KNVI
Sbjct:    6 PTREESVYKAKLAEQAERYEEMVEYMERVARAAGGASGGEELTVEERNLLSVAYKNVI 63          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 14332_MAIZE (14-3-3-like protein GF14-12 OS=Zea mays GN=GRF2 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.931e-12
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            +RE+ VY+AKLAEQAERYEEMV FM+  V     + ELTVEERNLLSVA KNVI
Sbjct:    7 SREENVYMAKLAEQAERYEEMVEFMEK-VAKTVDSEELTVEERNLLSVAYKNVI 59          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 14331_MAIZE (14-3-3-like protein GF14-6 OS=Zea mays GN=GRF1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.931e-12
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            +RE+ VY+AKLAEQAERYEEMV FM+  V     + ELTVEERNLLSVA KNVI
Sbjct:    7 SREENVYMAKLAEQAERYEEMVEFMEK-VAKTVDSEELTVEERNLLSVAYKNVI 59          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 1433A_TOBAC (14-3-3-like protein A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.135e-12
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 3
Query:   42 MGTPTREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            M +P RE+ VYLAKLAEQAERYEEMV FM+ +V +     ELT+EERNLLSVA KNVI
Sbjct:    1 MASP-REENVYLAKLAEQAERYEEMVEFMEKVVGAGD--DELTIEERNLLSVAYKNVI 55          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 14333_ARATH (14-3-3-like protein GF14 psi OS=Arabidopsis thaliana GN=GRF3 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.135e-12
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            TRE+ VY+AKLAEQAERYEEMV FM+  V       EL+VEERNLLSVA KNVI
Sbjct:    3 TREENVYMAKLAEQAERYEEMVEFMEK-VAKTVDVEELSVEERNLLSVAYKNVI 55          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 1433A_SOYBN (14-3-3-like protein A OS=Glycine max GN=GF14A PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.144e-11
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 3
Query:   42 MGTPTREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            M   +RE+ VY+AKLA++AERYEEMV FM+  V       ELTVEERNLLSVA KNVI
Sbjct:    1 MSDSSREENVYMAKLADEAERYEEMVEFMEK-VAKTVEVEELTVEERNLLSVAYKNVI 57          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 14333_ORYSJ (14-3-3-like protein GF14-C OS=Oryza sativa subsp. japonica GN=GF14C PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.144e-11
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            +RE+ VY+AKLAEQAERYEEMV +M+  V       ELTVEERNLLSVA KNVI
Sbjct:    2 SREENVYMAKLAEQAERYEEMVEYMEK-VAKTVDVEELTVEERNLLSVAYKNVI 54          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 14331_SOLTU (14-3-3-like protein OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.144e-11
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            +RE+ VY+AKLAEQAERYEEMV FM+ +  +     ELTVEERNLLSVA KNVI
Sbjct:    4 SREENVYMAKLAEQAERYEEMVEFMEKV--AKVDVEELTVEERNLLSVAYKNVI 55          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: RAD24_SCHPO (DNA damage checkpoint protein rad24 OS=Schizosaccharomyces pombe GN=rad24 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.347e-11
Identity = 39/58 (67.24%), Postives = 43/58 (74.14%), Query Frame = 3
Query:   42 MGTPTREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            M T +RE  VYLAKLAEQAERYE MV  M S+ ++     ELTVEERNLLSVA KNVI
Sbjct:    1 MSTTSREDAVYLAKLAEQAERYEGMVENMKSVASTD---QELTVEERNLLSVAYKNVI 55          
The following BLAST results are available for this feature:
BLAST of C21903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
14335_ORYSJ3.931e-1270.3714-3-3-like protein GF14-E OS=Oryza sativa subsp. ... [more]
14334_ORYSJ3.931e-1267.2414-3-3-like protein GF14-D OS=Oryza sativa subsp. ... [more]
14332_MAIZE3.931e-1270.3714-3-3-like protein GF14-12 OS=Zea mays GN=GRF2 PE... [more]
14331_MAIZE3.931e-1270.3714-3-3-like protein GF14-6 OS=Zea mays GN=GRF1 PE=... [more]
1433A_TOBAC5.135e-1268.9714-3-3-like protein A OS=Nicotiana tabacum PE=2 SV... [more]
14333_ARATH5.135e-1270.3714-3-3-like protein GF14 psi OS=Arabidopsis thalia... [more]
1433A_SOYBN1.144e-1163.7914-3-3-like protein A OS=Glycine max GN=GF14A PE=2... [more]
14333_ORYSJ1.144e-1168.5214-3-3-like protein GF14-C OS=Oryza sativa subsp. ... [more]
14331_SOLTU1.144e-1168.5214-3-3-like protein OS=Solanum tuberosum PE=2 SV=1[more]
RAD24_SCHPO4.347e-1167.24DNA damage checkpoint protein rad24 OS=Schizosacch... [more]

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Properties
Property NameValue
Genbank descriptionC21903 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSG-32R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21903 ID=C21903; Name=C21903; organism=Citrus sinensis; type=EST; length=216bp
GGCACGAGTCCAGTTAACTTTACAGTTTCTGCAATTCTGCTATGGGAACC
CCGACGAGAGAGCAATACGTTTACCTGGCGAAACTCGCNGAGCAAGCNGA
GCGCTATGAAGAGATGGTTAANTTCATGGACAGCCTCGTCACTTCCNCCA
CTCCGGCGACTGAACTCACCGTCGAGGAGCGCAACCTTCTCTCCGTTGCT
NACAAGAACGTCATCG
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