C21903

Overview
NameC21903
Unique NameC21903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length216
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: BMH2_YEAST (Protein BMH2 OS=Saccharomyces cerevisiae GN=BMH2 PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.677e-11
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            TRE  VYLAKLAEQAERYEEMV  M ++ +S     EL+VEERNLLSVA KNVI
Sbjct:    4 TREDSVYLAKLAEQAERYEEMVENMKAVASS---GQELSVEERNLLSVAYKNVI 54          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 14335_SOLLC (14-3-3 protein 5 OS=Solanum lycopersicum GN=TFT5 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.683e-11
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 3
Query:   42 MGTPTREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            M +P RE+ VY+A +A++AERYEEMV FM+ +V +     ELTVEERNLLSVA KNVI
Sbjct:    1 MASP-REENVYMANVADEAERYEEMVEFMEKVVAALN-GEELTVEERNLLSVAYKNVI 56          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 14332_SOLTU (14-3-3-like protein RA215 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.683e-11
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3
Query:   42 MGTPTREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            M +P RE+ VY+A +A +AERYEEMV FM+ +V +    TELTVEERNLLSVA KNVI
Sbjct:    1 MASP-REENVYMANVAARAERYEEMVEFMEKVVAALD--TELTVEERNLLSVAYKNVI 55          
The following BLAST results are available for this feature:
BLAST of C21903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
BMH2_YEAST5.677e-1170.37Protein BMH2 OS=Saccharomyces cerevisiae GN=BMH2 P... [more]
14335_SOLLC9.683e-1162.0714-3-3 protein 5 OS=Solanum lycopersicum GN=TFT5 P... [more]
14332_SOLTU9.683e-1163.7914-3-3-like protein RA215 OS=Solanum tuberosum PE=... [more]

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Properties
Property NameValue
Genbank descriptionC21903 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSG-32R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21903 ID=C21903; Name=C21903; organism=Citrus sinensis; type=EST; length=216bp
GGCACGAGTCCAGTTAACTTTACAGTTTCTGCAATTCTGCTATGGGAACC
CCGACGAGAGAGCAATACGTTTACCTGGCGAAACTCGCNGAGCAAGCNGA
GCGCTATGAAGAGATGGTTAANTTCATGGACAGCCTCGTCACTTCCNCCA
CTCCGGCGACTGAACTCACCGTCGAGGAGCGCAACCTTCTCTCCGTTGCT
NACAAGAACGTCATCG
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