CB250245

Overview
NameCB250245
Unique NameCB250245
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250245 vs. ExPASy Swiss-Prot
Match: DNAK_SHESM (Chaperone protein dnaK OS=Shewanella sp. (strain MR-4) GN=dnaK PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.451e-42
Identity = 100/239 (41.84%), Postives = 138/239 (57.74%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKNEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFDPSGIPPAPRG 707
            R++N+   EFK++   D+  +P A++RL+ A E+AK  LSST QT + +  +             ITRA+ E L  DL  + +EP++  L DA +  S +++V+LVGG TR+PKVQ+ + +FF GKE  K +NPDE           +LSG+    V+D             ET G VMT LI +NTTIPTK +QVFST  DNQ  V I V +GER +   N  LG+F+  GI PAPRG
Sbjct:  234 RLINYLADEFKKEQGLDLRKDPLAMQRLKEAAEKAKIELSSTNQTEVNLPYITADATGPKHLVVKITRAKLESLVEDLIIRTLEPLKVALADADLSVSDINEVILVGGQTRMPKVQEAVTNFF-GKEPRKDVNPDEAVAVGAAIQAGVLSGD----VKDVLLLDVTPLSLGIETMGSVMTKLIEKNTTIPTKAQQVFSTADDNQSAVTIHVLQGERKQASANKSLGQFNLDGIEPAPRG 467          
BLAST of CB250245 vs. ExPASy Swiss-Prot
Match: DNAK_SHEON (Chaperone protein dnaK OS=Shewanella oneidensis GN=dnaK PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.451e-42
Identity = 100/239 (41.84%), Postives = 138/239 (57.74%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKNEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFDPSGIPPAPRG 707
            R++N+   EFK++   D+  +P A++RL+ A E+AK  LSST QT + +  +             ITRA+ E L  DL  + +EP++  L DA +  S +++V+LVGG TR+PKVQ+ + +FF GKE  K +NPDE           +LSG+    V+D             ET G VMT LI +NTTIPTK +QVFST  DNQ  V I V +GER +   N  LG+F+  GI PAPRG
Sbjct:  234 RLINYLADEFKKEQGLDLRKDPLAMQRLKEAAEKAKIELSSTNQTEVNLPYITADATGPKHLVVKITRAKLESLVEDLIIRTLEPLKVALADADLSVSDINEVILVGGQTRMPKVQEAVTNFF-GKEPRKDVNPDEAVAVGAAIQAGVLSGD----VKDVLLLDVTPLSLGIETMGSVMTKLIEKNTTIPTKAQQVFSTADDNQSAVTIHVLQGERKQASANKSLGQFNLDGIEPAPRG 467          
BLAST of CB250245 vs. ExPASy Swiss-Prot
Match: DNAK_SHEAM (Chaperone protein dnaK OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=dnaK PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.451e-42
Identity = 98/239 (41.00%), Postives = 138/239 (57.74%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKNEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFDPSGIPPAPRG 707
            R++N+   EFK++   D+  +P A++RL+ A E+AK  LSST QT + +  +             +TRA+ E L  DL ++ +EP++  L DA +  S +++V+LVGG TR+PKVQ+ + +FF GKE  K +NPDE           +L+G+    V+D             ET G VMT LI +NTTIPTK  QVFST  DNQ  V I V +GER +   N  LG+F+  GI PAPRG
Sbjct:  234 RLINYLADEFKKEQGLDLRNDPLAMQRLKEAAEKAKIELSSTNQTEVNLPYITADATGPKHLVVKVTRAKLESLVEDLIQRSLEPLKVALADADLSVSDINEVILVGGQTRMPKVQEAVTNFF-GKEPRKDVNPDEAVAVGAAVQAGVLAGD----VKDVLLLDVTPLSLGIETMGSVMTKLIEKNTTIPTKASQVFSTADDNQSAVTIHVLQGERKQASANKSLGQFNLEGIEPAPRG 467          
BLAST of CB250245 vs. ExPASy Swiss-Prot
Match: DNAK_HAES2 (Chaperone protein dnaK OS=Haemophilus somnus (strain 2336) GN=dnaK PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.451e-42
Identity = 101/239 (42.26%), Postives = 137/239 (57.32%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKNEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFDPSGIPPAPRG 707
            R++N+ V EFK++   D+  +P A++RL+ A E+AK  LSS  QT + +  +             +TRA+ E L  DL  + MEPV+  L DA +  S ++DV+LVGG TR+P VQQ + +FF GKE  + +NPDE           +L+G+    V+D             ET GGVMT LI +NTTIPTK  QVFST  DNQ  V I V +GER +   N  LG+F+  GI PAPRG
Sbjct:  235 RVINYLVDEFKKEQGVDLRNDPLAMQRLKEAGEKAKIELSSAQQTDVNLPYITADATGPKHLNIKLTRAKLEALVEDLVARSMEPVKVALSDAGLSVSEINDVILVGGQTRMPLVQQKVAEFF-GKEPRRDVNPDEAVAIGAAVQGGVLAGD----VKDVLLLDVTPLSLGIETMGGVMTTLIEKNTTIPTKKSQVFSTAEDNQSAVTIHVLQGERKQASANKSLGQFNLEGINPAPRG 468          
BLAST of CB250245 vs. ExPASy Swiss-Prot
Match: DNAK_HAES1 (Chaperone protein dnaK OS=Haemophilus somnus (strain 129Pt) GN=dnaK PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.451e-42
Identity = 101/239 (42.26%), Postives = 137/239 (57.32%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKNEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFDPSGIPPAPRG 707
            R++N+ V EFK++   D+  +P A++RL+ A E+AK  LSS  QT + +  +             +TRA+ E L  DL  + MEPV+  L DA +  S ++DV+LVGG TR+P VQQ + +FF GKE  + +NPDE           +L+G+    V+D             ET GGVMT LI +NTTIPTK  QVFST  DNQ  V I V +GER +   N  LG+F+  GI PAPRG
Sbjct:  235 RVINYLVDEFKKEQGVDLRNDPLAMQRLKEAGEKAKIELSSAQQTDVNLPYITADATGPKHLNIKLTRAKLEALVEDLVARSMEPVKVALSDAGLSVSEINDVILVGGQTRMPLVQQKVAEFF-GKEPRRDVNPDEAVAIGAAVQGGVLAGD----VKDVLLLDVTPLSLGIETMGGVMTTLIEKNTTIPTKKSQVFSTAEDNQSAVTIHVLQGERKQASANKSLGQFNLEGINPAPRG 468          
BLAST of CB250245 vs. ExPASy Swiss-Prot
Match: DNAK_DESMR (Chaperone protein dnaK OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.451e-42
Identity = 99/239 (41.42%), Postives = 140/239 (58.58%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKNEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFDPSGIPPAPRG 707
            R++++ V EFK++N  D+S +  AL+RL+ A E+AK+ LS+  +T + +  +             ITR + E L  DL ++ +EP  K L DA +  S + +VVLVGG TR+P V + +Q+FF GKE  +S+NPDE           IL+G+    V+D             ET GGV T LI RNTTIPT+  QVF+T +DNQP V I V +GER    DN  LG+F+ +G+PPA RG
Sbjct:  228 RVISYLVDEFKKENGIDLSQDRMALQRLKEAGEKAKKELSTAMETEVNLPFITADASGPKHMMVKITRGKLESLVDDLVKRTVEPCRKALADAGLKASDIDEVVLVGGMTRMPLVSKTVQEFF-GKEPNRSVNPDEVVAMGAAIQGGILAGD----VKDVLLLDVTPLSLGIETLGGVFTKLIERNTTIPTRKSQVFTTAADNQPSVSIHVLQGERPMANDNMTLGRFELTGLPPAARG 461          
BLAST of CB250245 vs. ExPASy Swiss-Prot
Match: DNAK_CHLL2 (Chaperone protein dnaK OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=dnaK PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.451e-42
Identity = 100/239 (41.84%), Postives = 140/239 (58.58%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE---IDSLYEGIDFYT-TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKNEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFDPSGIPPAPRG 707
            +++++   EFK++   D+  +  AL+RL+ A E+AK  LSS   T I    I +  EG       +TRA+FE +  DLF K +EP  + ++++K+D   + +VVLVGGSTRIPKVQ L+++FF GKE  +S+NPDE           +L G+    V D             ET GGVMT LI  NTTIPT+ ++VFST +D+Q  V + V +GER    DN  LG+F    IPPAPRG
Sbjct:  228 KIIDYLADEFKKQEGIDLRNDAIALQRLKEAAEKAKVELSSRTDTEINLPFITATQEGPKHLVINLTRAKFEAMCADLFEKILEPCHRAVKNSKLDMKEIDEVVLVGGSTRIPKVQTLVKEFF-GKEPNRSVNPDEVVAIGAAIQGGVLKGD----VTDVLLLDVSPLSLGIETLGGVMTRLIEANTTIPTRKQEVFSTAADSQTSVEVHVLQGERPMASDNKTLGRFHLGDIPPAPRG 461          
BLAST of CB250245 vs. ExPASy Swiss-Prot
Match: HSP7M_PEA (Heat shock 70 kDa protein, mitochondrial OS=Pisum sativum GN=HSP1 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.895e-42
Identity = 102/238 (42.86%), Postives = 136/238 (57.14%), Query Frame = 3
Query:    6 MVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKNEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFDPSGIPPAPRG 707
            +++  V EFKR    D++ +  AL+RLR A E+AK  LSST+QT I +  +            T+TR++FE L  +L  +   P + CL+DA +    V +V+LVGG TR+PKVQQ++ + F GK   K +NPDE           IL G+    V++             ET GG+ T LI RNTTIPTK  QVFST +DNQ  V I+V +GER    DN  LG+FD  GIPPAPRG
Sbjct:  280 LLDFLVSEFKRTESIDLAKDKLALQRLREAAEKAKIELSSTSQTEINLPFISADASGAKHLNITLTRSKFEALVNNLIERTKAPCKSCLKDANISIKDVDEVLLVGGMTRVPKVQQVVSEIF-GKSPSKGVNPDEAVAMGAALQGGILRGD----VKELLLLDVTPLSLGIETLGGIFTRLISRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKSLGEFDLVGIPPAPRG 512          
BLAST of CB250245 vs. ExPASy Swiss-Prot
Match: GRP75_CHICK (Stress-70 protein, mitochondrial OS=Gallus gallus GN=HSPA9 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.895e-42
Identity = 100/238 (42.02%), Postives = 141/238 (59.24%), Query Frame = 3
Query:    6 MVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKNEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFDPSGIPPAPRG 707
            ++ + V+EFKR+   D++ +  AL+R+R A E+AK  LSS+ QT I +  L             ++R++FE +  DL ++ + P +K ++DA++ KS + +V+LVGG TR+PKVQQ +QD F G+   K++NPDE           +L+G+    V D             ET GGV T LI RNTTIPTK  QVFST +D Q  V I+V +GER    DN LLG+F   GIPPAPRG
Sbjct:  284 LLQYIVKEFKRETSVDLTKDNMALQRVREASEKAKCELSSSVQTDINLPYLTMDASGPKHLNMKLSRSQFEGIVADLIKRTVAPCQKAMQDAEVSKSDIGEVILVGGMTRMPKVQQTVQDLF-GRAPSKAVNPDEAVAIGAAIQGGVLAGD----VTDVLLLDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMASDNKLLGQFTLVGIPPAPRG 516          
BLAST of CB250245 vs. ExPASy Swiss-Prot
Match: DNAK_SODGM (Chaperone protein dnaK OS=Sodalis glossinidius (strain morsitans) GN=dnaK PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.895e-42
Identity = 100/239 (41.84%), Postives = 138/239 (57.74%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKNEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFDPSGIPPAPRG 707
            R++N+ V EFK+    D+  +P A++RL+ A E+AK  LSS  QT + +  +             +TRA+ E L  +L  + +EP++  L+DA +  S + DV+LVGG TR+P VQ+ + DFF GKE  K +NPDE           +L+G+    V+D             ET GGVMT LI +NTTIPTK+ QVFST  DNQ  V I V +GER R+ DN  LG+F+  GI PA RG
Sbjct:  235 RLINYLVDEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADGSGPKHMNLKVTRAKLESLVEELVNRTLEPLKVALKDAGLSVSDIKDVILVGGQTRMPLVQKKVTDFF-GKEPRKDVNPDEAVAIGAAVQGGVLAGD----VKDVLLLDVTPLSLGIETMGGVMTPLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRSGDNKSLGQFNLDGISPAMRG 468          
The following BLAST results are available for this feature:
BLAST of CB250245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_SHESM1.451e-4241.84Chaperone protein dnaK OS=Shewanella sp. (strain M... [more]
DNAK_SHEON1.451e-4241.84Chaperone protein dnaK OS=Shewanella oneidensis GN... [more]
DNAK_SHEAM1.451e-4241.00Chaperone protein dnaK OS=Shewanella amazonensis (... [more]
DNAK_HAES21.451e-4242.26Chaperone protein dnaK OS=Haemophilus somnus (stra... [more]
DNAK_HAES11.451e-4242.26Chaperone protein dnaK OS=Haemophilus somnus (stra... [more]
DNAK_DESMR1.451e-4241.42Chaperone protein dnaK OS=Desulfovibrio magneticus... [more]
DNAK_CHLL21.451e-4241.84Chaperone protein dnaK OS=Chlorobium limicola (str... [more]
HSP7M_PEA1.895e-4242.86Heat shock 70 kDa protein, mitochondrial OS=Pisum ... [more]
GRP75_CHICK1.895e-4242.02Stress-70 protein, mitochondrial OS=Gallus gallus ... [more]
DNAK_SODGM1.895e-4241.84Chaperone protein dnaK OS=Sodalis glossinidius (st... [more]

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Properties
Property NameValue
Genbank descriptionEST0007 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ007 similar to 70 kDa heat shock protein (acc# P27322), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250245 ID=CB250245; Name=CB250245; organism=Citrus sinensis; type=EST; length=709bp
ACAGAATGGTGAACCACTTTGTTCAAGAGTTCAAGAGGAAAAACAAGAAG
GATATTAGTGGAAACCCCAGAGCGTTGAGGAGGTTGAGAACCGCCTGTGA
AAGGGCTAAGAGGACCCTGTCATCAACTGCACAGACTACAATTGAGATTG
ATTCTTTATATGAGGGTATTGATTTCTACACAACCATTACAAGGGCTAGA
TTCGAAGAGTTGAACATGGATTTGTTCAGGAAGTGTATGGAGCCAGTGGA
GAAATGCCTGAGAGATGCTAAGATGGACAAGAGCAGTGTCCATGATGTGG
TTCTTGTTGGTGGGTCTACTAGGATCCCAAAAGTCCAGCAACTGTTGCAG
GACTTCTTCAATGGAAAAGAGCTATGCAAGAGCATCAACCCTGATGAAGC
GGTTGCCTACGGTGCTGCTGTGCAGGCTGCAATCTTGAGTGGTGAGGGTA
ATGAGAAGGTTCAGGACCTCTTATTGCTTGACGTCACCCCTCTATCGCTG
GGTTTGGAGACTGCTGGTGGAGTCATGACTGTGTTGATTCCAAGGAACAC
CACTATTCCAACCAAGAATGAGCAGGTGTTCTCCACATACTCTGACAACC
AGCCCGGGGTGTTGATCCAGGTCTACGAGGGTGAGCGCACAAGAACCCGT
GACAACAACTTGCTTGGAAAGTTTGATCCCTCTGGCATTCCTCCTGCTCC
AAGAGGGGT
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